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...tgttatttgtgaataattactttgtattttctttggctatttgtaatgtttagaaggttatcgaaaacatgtatataaatcactgaataaatttttgtagGTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACAAACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTC
species | Oryza sativa |
transcript | LOC_Os09g34910.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAA GTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACAEST: gi|29672112|gb|CB668387.1|CB668387
genomic: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAAgtaagtaatc ... atttttgtagGTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACA
EST: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAA GTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACAEST: gi|88695020|gb|CI739058.1|CI739058
genomic: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAAgtaagtaatc ... atttttgtagGTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACA
EST: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAA GTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACAEST: gi|88336930|gb|CI627010.1|CI627010
genomic: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAAgtaagtaatc ... atttttgtagGTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACA
EST: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAA GTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACAEST: gi|25802299|gb|CA758260.1|CA758260
genomic: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAAgtaagtaatc ... atttttgtagGTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACA
EST: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAA GTTATTCTTGCTGGGNTCANGAGTGGCAAGTTTTTAGTTTTGGTTGCTACAEST: gi|29637932|gb|CB642941.1|CB642941
genomic: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAAgtaagtaatc ... atttttgtagGTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACA
EST: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAA GTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACAEST: gi|58691703|gb|CK080390.1|CK080390
genomic: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAAgtaagtaatc ... atttttgtagGTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACA
EST: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAA GTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACA
genomic: TTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAAGCTCAGCGTGAAgtaagtaatc ... atttttgtagGTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACA
atgtttagaaggttatcgaaaacatgtatataaatcactgaataaatttttgtagGTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACAAACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTC
tttttgt CT-rich tract
atgtatataaatcact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttatttgtgaataattactttgtattttctttggctatttgtaatgtttagaaggttatcgaaaacatgtatataaatcactgaataaatttttgtagGTTATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACAAACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - -tgtaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat