1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcaaaaagagagtattcccatatttcttttcgcttgcataccttataatgccagtttttgagacattatggtgttgatttctgacatttttgttattcagGCTTGCTGCAGGTTATGCACTCCAGAGCATGTTTGAGCCCTTCAGCTGTGCAGTTTGCCAAGTACAGTTGAAAGCTGGCCAGGGAATTTCTGTACACAGC
species | Oryza sativa |
transcript | LOC_Os09g28560.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATGAGGTGGAAGAAATATTTGACGATGGTTCCGCTATGCTTTCTAAAAG GCTTGCTGCAGGTTATGCACTCCAGAGCATGTTTGAGCCCTTCAGCTGTGCEST: gi|87009257|gb|CI276571.1|CI276571
genomic: GATGAGGTGGAAGAAATATTTGACGATGGTTCCGCTATGCTTTCTAAAAGgtactatgtt ... tgttattcagGCTTGCTGCAGGTTATGCACTCCAGAGCATGTTTGAGCCCTTCAGCTGTGC
EST: GATGAGGTGGAAGAAATATTTGACGATGGTTCCGCTATGCTTTCTAAAAG GCTTGCTGCAGGTTATGCACTCCAGAGCATGTTTGAGCCCTTCAGCTGTGCEST: gi|86537507|gb|CI177713.1|CI177713
genomic: GATGAGGTGGAAGAAATATTTGACGATGGTTCCGCTATGCTTTCTAAAAGgtactatgtt ... tgttattcagGCTTGCTGCAGGTTATGCACTCCAGAGCATGTTTGAGCCCTTCAGCTGTGC
EST: TGGAAGAAATATTTGACGATGGTTCCGCTATGCTTTCTAAAAG GCTTGCTGCAGGTTATGCACTCCAGAGCATGTTTGAGCCCTTCAGCTGTGC
genomic: TGGAAGAAATATTTGACGATGGTTCCGCTATGCTTTCTAAAAGgtactatgtt ... tgttattcagGCTTGCTGCAGGTTATGCACTCCAGAGCATGTTTGAGCCCTTCAGCTGTGC
taatgccagtttttgagacattatggtgttgatttctgacatttttgttattcagGCTTGCTGCAGGTTATGCACTCCAGAGCATGTTTGAGCCCTTCAGCTGTGCAGTTTGCCAAGTACAGTTGAAAGCTGGCCAGGGAATTTCTGTACACAGC
ttctgac putative branch site (score: 2)
tttttgtt CT-rich tract
acatttttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaaaagagagtattcccatatttcttttcgcttgcataccttataatgccagtttttgagacattatggtgttgatttctgacatttttgttattcagGCTTGCTGCAGGTTATGCACTCCAGAGCATGTTTGAGCCCTTCAGCTGTGCAGTTTGCCAAGTACAGTTGAAAGCTGGCCAGGGAATTTCTGTACACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- aaaaaga
- - - - - - - - - - - - - - - - - tgcatac
- - - - - - - - - - - - - - - - - - - - - - - -atgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctga