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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctcttccgcacgagtgttttgttctctttcgcacgttagttgaattttgctctgattttttattttttaagcttttcagGCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCTTTGCGCAATAATGCACAATTCCGAACCTTGCTTTCTTTAGTGCAAGCCA

Basic information

species Oryza sativa
transcript LOC_Os09g24200.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27554427|gb|CA998327.1|CA998327
EST:     CAATTCTTTCGTCTGGACCAAACGCTAGTCCCTTGGACCTCTTTCCTCAA                         GCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCT
genomic: CAATTCTTTCGTCTGGACCAAACGCTAGTCCCTTGGACCTCTTTCCTCAAgtactctctt ... agcttttcagGCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCT
EST: gi|218493918|gb|FG945281.1|FG945281
EST:     CAATTCTTTCGTCTGGACCAAACGCTAGTCCCTTGGACCTCTTTCCTCAA                         GCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCT
genomic: CAATTCTTTCGTCTGGACCAAACGCTAGTCCCTTGGACCTCTTTCCTCAAgtactctctt ... agcttttcagGCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCT
EST: gi|58665783|gb|CK054469.1|CK054469
EST:     CAATTCTTTCGTCTGGACCAAACGCTAGTCCCTTGGACCTCTTTCCTCAA                         GCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCT
genomic: CAATTCTTTCGTCTGGACCAAACGCTAGTCCCTTGGACCTCTTTCCTCAAgtactctctt ... agcttttcagGCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCT
EST: gi|29678389|gb|CB674664.1|CB674664
EST:     CAATTCTTTCGTCTGGACCAAACGCTAGTCCCTTGGACCTCTTTCCTCAA                         GCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCT
genomic: CAATTCTTTCGTCTGGACCAAACGCTAGTCCCTTGGACCTCTTTCCTCAAgtactctctt ... agcttttcagGCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttcgcacgttagttgaattttgctctgattttttattttttaagcttttcagGCCCTTCCAAATGCTTCCACCGATGCTGCTGGTCTAGGAAATCTTGATGCTTTGCGCAATAATGCACAATTCCGAACCTTGCTTTCTTTAGTGCAAGCCA
                         ctctgat  putative branch site (score: 4)
                                               cttttc  putative PPT
                  aattttgctctgattt  TA-rich tract