1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgtatgagttctcactaatgcctatgcatatgatacacgagtgcaatggattttttttcgttgtgctttcttttcttatccgtatgttcctctttttagAAAATACCTTTGGTTATTGGTCCACGACGCCCTGGTGATGCTGAGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAA
species | Oryza sativa |
transcript | LOC_Os09g15420.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGTGTTGGAAATAGTTAATGCATTTGAGAAAGTTTCTGGAAAG AAAATACCTTTGGTTATTGGTCCACGACGCCCTGGTGATGCTGAGATTCTCEST: gi|86257757|gb|CI064110.1|CI064110
genomic: CAGTGTTGGAAATAGTTAATGCATTTGAGAAAGTTTCTGGAAAGgtatgcctga ... ctctttttagAAAATACCTTTGGTTATTGGTCCACGACGCCCTGGTGATGCTGAGATTCTC
EST: GAAAGTTTCTGGAAAG AAAATACCTTTGGTTATTGGTCCACGACGCCCTGGTGATGCTGAGATTCTCEST: gi|86505663|gb|CI148296.1|CI148296
genomic: GAAAGTTTCTGGAAAGgtatgcctga ... ctctttttagAAAATACCTTTGGTTATTGGTCCACGACGCCCTGGTGATGCTGAGATTCTC
EST: GAACATCAGTGTTGGAAATAGTTAATGCATTTGAGAAAGTTTCTGGAAAG AAAATACCTTTGGTTATTGGTCCACGACGCCCTGGTGATGCTGAGATTCTC
genomic: GAACATCAGTGTTGGAAATAGTTAATGCATTTGAGAAAGTTTCTGGAAAGgtatgcctga ... ctctttttagAAAATACCTTTGGTTATTGGTCCACGACGCCCTGGTGATGCTGAGATTCTC
aatggattttttttcgttgtgctttcttttcttatccgtatgttcctctttttagAAAATACCTTTGGTTATTGGTCCACGACGCCCTGGTGATGCTGAGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAA
tgctttcttttcttat CT-rich tract
atttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtatgagttctcactaatgcctatgcatatgatacacgagtgcaatggattttttttcgttgtgctttcttttcttatccgtatgttcctctttttagAAAATACCTTTGGTTATTGGTCCACGACGCCCTGGTGATGCTGAGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
ttgtatg
- - - - - - - -ctaatgc
- - - - - - - - - - - ctatgca
- - - - - - - - - - - - - - - - gatacac
- - - - - - - - - - - - - - - - - - - - - tgcaatg