1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tacacatagttctggacaaacaaattactttctggcacagaaatctgatttaccccctttttgtattgtacatgataatatttttccatcatcattatagGTTCAACTAGAAGAGAAAGCAGGGAAAGGAGCAGAGATCGAGGCAGAGACCATGACTACAATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGG
species | Oryza sativa |
transcript | LOC_Os09g12800.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GACGGGCTGGATGGGAGGTTGAGCAAC GEST: gi|86260178|gb|CI066051.1|CI066051
genomic: GACGGGCTGGATGGGAGGTTGAGCAACgtggtattac ... atcattatag-
EST: GACGGGCTGGATGGGAGGTTGAGCAAC GEST: gi|86260178|gb|CI066051.1|CI066051
genomic: GACGGGCTGGATGGGAGGTTGAGCAACgtggtattac ... atcattatag-
EST: GACGGGCTGGATGGGAGGTTGAGCAAC GEST: gi|86260178|gb|CI066051.1|CI066051
genomic: GACGGGCTGGATGGGAGGTTGAGCAACgtggtattac ... atcattatag-
EST: GACGGGCTGGATGGGAGGTTGAGCAAC GEST: gi|88249569|gb|CI249418.1|CI249418
genomic: GACGGGCTGGATGGGAGGTTGAGCAACgtggtattac ... atcattatag-
EST: GGATGGGAGGTTGAGCAAC GTTCAACTAGAAGAGAAAGCAGGGAAAGGAGCAGAGATCGAGGCAGAGACCEST: gi|87029644|gb|CI257439.1|CI257439
genomic: GGATGGGAGGTTGAGCAACgtggtattac ... atcattatagGTTCAACTAGAAGAGAAAGCAGGGAAAGGAGCAGAGATCGAGGCAGAGACC
EST: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAAC GEST: gi|87029644|gb|CI257439.1|CI257439
genomic: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACgtggtattac ... atcattatag-
EST: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAAC GEST: gi|87029644|gb|CI257439.1|CI257439
genomic: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACgtggtattac ... atcattatag-
EST: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAAC GEST: gi|87029644|gb|CI257439.1|CI257439
genomic: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACgtggtattac ... atcattatag-
EST: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAAC GEST: gi|58601891|gb|CK012419.1|CK012419
genomic: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACgtggtattac ... atcattatag-
EST: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAAC GTGGTTCAACTAGAAGAGAAAGCAGGGAAAGGAGCAGAGATCGAGGCAGAGEST: gi|29684967|gb|CB681242.1|CB681242
genomic: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACgtggtattac ... atcattatagGT--T-CAACTAGAAGAGAAAGCAGGGAAAGGAGCAGAGATCGAGGCAGAG
EST: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAAC GEST: gi|29684967|gb|CB681242.1|CB681242
genomic: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACgtggtattac ... atcattatag-
EST: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAAC GEST: gi|29684967|gb|CB681242.1|CB681242
genomic: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACgtggtattac ... atcattatag-
EST: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAAC GEST: gi|29684967|gb|CB681242.1|CB681242
genomic: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACgtggtattac ... atcattatag-
EST: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAAC G
genomic: TGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACgtggtattac ... atcattatag-
tgatttaccccctttttgtattgtacatgataatatttttccatcatcattatagGTTCAACTAGAAGAGAAAGCAGGGAAAGGAGCAGAGATCGAGGCAGAGACCATGACTACAATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGG
atctgat putative branch site (score: 4)
tttttgtattgtacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacacatagttctggacaaacaaattactttctggcacagaaatctgatttaccccctttttgtattgtacatgataatatttttccatcatcattatagGTTCAACTAGAAGAGAAAGCAGGGAAAGGAGCAGAGATCGAGGCAGAGACCATGACTACAATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGG
-acacata
- - - - - - - - -aaacaaa
- - - - - - - - - - - - - - -ttctggc
- - - - - - - - - - - - - - - - - - acagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacatg