1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagaatcattttctgttcacttctgtatcaaattgactgcatcgcacctcctttacatatccaaatatttgcgccctgcagGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCTTAAACCCAAGCCCAAGACTGCCTGATTGTGTCTTGGTATCTATCGTGA
species | Oryza sativa |
transcript | LOC_Os09g12600.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGG GAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCEST: gi|58662048|gb|CK050728.1|CK050728
genomic: GACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGgtaagaatca ... cgccctgcagGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGC
EST: GACATCCGTTCTGTTCTTCCGAACCCCTGTTTCGCCTATCAACTCTCTGG GAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCEST: gi|88254980|gb|CI353804.1|CI353804
genomic: GACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGgtaagaatca ... cgccctgcagGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGC
EST: CCCCTGTTTCGCCTATCAACTCTCTGG GAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAAGTGAAGCGGCEST: gi|88366076|gb|CI548323.1|CI548323
genomic: CCCCTGTTTCGCCTATCAACTCTCTGGgtaagaatca ... cgccctgcagGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGC
EST: TCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGG GAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCEST: gi|88276494|gb|CI397098.1|CI397098
genomic: TCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGgtaagaatca ... cgccctgcagGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGC
EST: CCCTGTTTCGCCTATC-ACTCTCTGG G-ACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCEST: gi|88468110|gb|CI517569.1|CI517569
genomic: CCCTGTTTCGCCTATCAACTCTCTGGgtaagaatca ... cgccctgcagGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGC
EST: GTTCTGTTGTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGG GAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCEST: gi|88247773|gb|CI247622.1|CI247622
genomic: GTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGgtaagaatca ... cgccctgcagGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGC
EST: GACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGG GAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCEST: gi|89180351|gb|CI044630.1|CI044630
genomic: GACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGgtaagaatca ... cgccctgcagGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGC
EST: GACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGG GAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCEST: gi|88273727|gb|CI394133.1|CI394133
genomic: GACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGgtaagaatca ... cgccctgcagGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGC
EST: GACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGG GAACCGGAGTCGCTCTTGCCGGAGTGTTCCGGTACTCACAATTGAAGCGGCEST: gi|88247742|gb|CI247591.1|CI247591
genomic: GACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGgtaagaatca ... cgccctgcagGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGC
EST: GACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGG GAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCEST: gi|88978323|gb|CI384744.1|CI384744
genomic: GACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGgtaagaatca ... cgccctgcagGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGC
EST: GACATCCATTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGG GAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAAATTGAAGCGG
genomic: GACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGgtaagaatca ... cgccctgcagGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAA-TTGAAGCGG
atcaaattgactgcatcgcacctcctttacatatccaaatatttgcgccctgcagGAACCGGAGTCGCTCTTGCCGGAGTTTTCCTGTACTCACAATTGAAGCGGCTTAAACCCAAGCCCAAGACTGCCTGATTGTGTCTTGGTATCTATCGTGA
aattgac putative branch site (score: 47)
atatccaaatattt TA-rich tract