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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcacaagcaaaatatcttcataaaattttacttgaaataattcaaattatttgtttgcaacagctttactgttcagttgtttactaccattgcttcacgattgttggaaacctgacttgctttgtttctggcattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA

Basic information

species Oryza sativa
transcript LOC_Os09g07510.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g07510.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G102858_T01 (Zea mays), 3'ss of exon 7
gtcacaagcaaaatatcttcataaaattttacttgaaataattcaaattatttgtttgcaacagctttactgttca--gttgtttactaccattgcttcacgattgttggaaac---ctgacttgctttgtttctggcattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA
                                               || ||    | |||||    | ||  ||    ||| |   |  ||     | |    || |  ||     ||||||      ||||      || || |||| || ||  | |||||||| ||||| ||||| ||||||||||| |||||||| || ||||||||||| ||||| || || ||||| || ||||||||||
-----------------------------------------------ttgttaacgtacaacaatactgctaatctttattggtacttgtcaacagctaaatgctgatctaattgtactgactgttccagttttgacttttttgcagGACGCCACTCTTGAACAACTGCTTCCCATTTTTCTTTCTTTGCTGAAGGATGAGTTCCCTGATGTTCGACTCAACATTATAAGCAAACTTGATCAAGTTA

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA02G10790.1 (Glycine max), 3'ss of exon 7
gtcacaagcaaaatatcttcataaaattttacttgaaataattcaaattatttgtttgcaacagctttactgttcagttgtttactaccattgcttcacgattgttggaaacctg-acttgctt-tgtttctggcatt-ctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA
                                 |  |||  | ||| | ||     ||   ||||   | |||| |    |||       ||  ||||  |||      || ||   | || || ||| | |  | ||  || |||| || ||||| || || |||||||||||||| || ||  |  | |||||||||||||||||||| || || ||||| || |||||||| |||||||| |
---------------------------------tttaatgctacaactaatgc---tgtggcagc---attgtttaaccttttt------ttctttcaaaatttccaagaaactatgcctgtttatgtgtttttctttattgcagGATGCAACAATTGAGCAGCTTCTTCCTATTTTTCTCTCCCTTTTGAAGGATGAATTTCCTGATGTACGCCTAAATATCATAAGCAAGCTTGATCAAGTGA

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA20G24790.1 (Glycine max), 3'ss of exon 7
gtcacaagcaaaatatcttcataaaattttacttgaaataattcaaattatttgtttgcaacagctttactgttcagttgtttactaccattgcttcacgattgttggaaacctgacttgctttgtttctggcattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA
                                   | |||||  | |  || | ||| | |      || ||||    |  |   |    ||| |     | ||| | |   | |   | | || | |         || |||| || ||||| || || ||||||||||||||||||||  |  | ||||||||||||||||| || || || || || ||||||||||| |||||||| |
-------------------------------taaaagataatcaacaaaatctattttctagg---ctattgttatagtagtagttttatttggt--gtaaatgt-gcatctcagttctaccttatcttca-----ttgcagGAAGCAACAATTGAGCAGCTTCTTCCTATTTTCCTTTCCCTTTTGAAGGATGAATTTCCTGACGTACGCCTAAACATTATCAGCAAGCTTGATCAAGTGA

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA09G31760.1 (Glycine max), 3'ss of exon 7
gtcacaagcaaaatatcttcataaaattttacttgaaataattcaaattatttgtttgcaacagctttactgttcagttgtttactaccattgcttcacgattgttggaaacctgacttgctttgtttctggcattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA
                                   |||   || ||| | |||   || || ||   | |   ||  ||    |  |  || | | |||  || |||      | |  || |||  |  |||     || |||| || |||||||| |||||||| ||||||||||||||| |  | || || || |||||||||||  |||| ||||| ||||||||||| |||||||| |
--------------------------------cctaaactcttgaaactgtttccatgtaaaagtaattcaactc--ttaaagag-aggatggatgcacc-ttcttgct--tttaaaatgtttttgtggtgg----ttgcagGATGCCACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGA

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA10G42250.1 (Glycine max), 3'ss of exon 7
gtcacaagcaaaatatcttcataaaattttacttgaaataattcaaattatttgtttgcaacagctttactgttcagttgtttactaccattgcttcacgattgttggaaacctgacttgctttgtttctggcattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA
                              |    | ||| | || |  || | ||| |   ||  | | |||         ||  |  | |  ||     |   ||  || || | || ||   ||     ||||  | |||| || ||||| || || ||||||||||||||||||||  |  | |||||||||||||| || || || || || || ||||||||||| |||||||| |
------------------------------ataaaagatagtacacaaaatctattttc--taggctaattgtga-------tagcagtagttttttggtgtaaatgtgaatctcagtt-ctaccttatcttcatt--gcagGAAGCAACAATTGAGCAGCTTCTTCCTATTTTCCTTTCCCTTTTGAAGGATGAATTTCCCGACGTGCGCCTAAACATTATCAGCAAGCTTGATCAAGTGA

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA07G10000.1 (Glycine max), 3'ss of exon 6
gtcacaagcaaaatatcttcataaaattttacttgaaataattcaaattatttgtttgcaacag---ctttactgttcagttgtttactaccattgcttcacgattgttggaaacctgacttgctttgtttctggcattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA
                                   |||   || ||| | ||    || || ||   ||  ||| || |   |   | |       |||  || || ||  |||| |           ||| |||   | || |||| |||||||| || |||||||| ||||||||||||||| |  | || || || |||||||||||  |||| ||||| ||||||||||| |||||||| |
---------------------------------ctaaactcttgaaactgttcccatgtaaaagtaactcaactcttaaagagaggattgatgcaccttttcgctt-ttaaaaacatt----------tttgtggtggt-tgcagGATGCTACAATTGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGA

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 3'ss of exon 7
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 3'ss of exon 8
gtcacaagcaaaatatcttcataaaattttacttgaaataattcaaattatttgtttgcaacagctttactgttcagttgtttactaccattgcttcacgat-tgttggaaacctgacttgctttgtttctggcattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA
                                          |    |   || ||| |   || | | || |  |||  | ||   ||| || ||     | |||| |  |  | | ||  | | | |||    | || ||||| || ||||| || |||||||| || |||||||||||| |||| || ||||| ||||||||||| || || ||||| ||||||||||| |||||||| |
------------------------------------------tttggtagattttttccctgagatgttctatggagtgatctatatccactggtttggtctctgtttgtcatttaa-ttaatatatatctttattcctatagGACGCAACAATAGATCAACTTCTGCCCATTTTCCTTTCTCTGCTTAAAGATGAGTTTCCTGATGTCCGACTGAATATTATCAGCAAGCTTGATCAAGTAA

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 3'ss of exon 7
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 3'ss of exon 6
gtcacaagcaaaatatcttcataaaattttacttgaaataattcaaattatttgtttgcaacagctttactgttcagttgtttactaccattgcttcacgattgttggaaacctgacttgctttgtttctggcattc-tgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA
                        ||||   ||    | ||||||||||  |||   |       ||| ||||| ||         | ||| | |||  ||   |||||   ||||    |||||| |  |    |  || |||| || ||||| || ||||||||||| ||||| |||||| |  | |||||||| ||||||||||| || || ||||| || |||||||| |||||| | |
-----------------------caattgatctc---acaattcaaatttattgggagtgc--atttttctgttaag---------atcat-gtttcttga--attggatttctga---actttgtcttggttgctgatgcagGATGCAACAATTGATCAACTTCTTCCAATTTTTCTTTCTCTTTTGAAGGATGACTTTCCTGATGTACGACTAAATATCATTAGCAAGCTTGATCAAATAA

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 3'ss of exon 7
lower sequence: PP1S214_34V6.1 (Physcomitrella patens), 3'ss of exon 6
gtcacaagcaaaatatcttcataaaattttacttgaaataattcaaattatttgtttgcaacagctttactgttca-gttgtttactaccattgcttcacgattgttggaaacctgacttgctttgtttctggcattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA
                                          ||||| | || | |||  |   ||  |   |||    | | | |        ||  |   |  |  | |     |  |   || |  |     || || |||| ||||| || || |||||||| || || || || ||  || | |||||||||||||| ||||| || || ||||| ||||||||||| |||||||| |
------------------------------------------tcaaact-ttggattgatatttctgcatccttcttaatatctgcataagcctctcaaaagtgatctgcatttcaatgtatcttttggcatcatttttgcagGAAGCTACCATTGAGCAACTTCTGCCCATATTTCTGTCACTGTTGAAGGATGAATTTCCAGATGTGCGACTAAATATTATCAGCAAGCTAGATCAAGTGA

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 3'ss of exon 7
lower sequence: PP1S197_114V6.1 (Physcomitrella patens), 3'ss of exon 6
gtcacaagcaaaatatcttcataaaattttacttgaaataattcaaattatttgtttgcaacagctttactgttcagttgtttactaccattgcttcacgattgttggaaacctgacttgctttgtttctggcattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA
                          |||||     |||  || ||||| |   |   |||| |  |   | | |  |         ||| ||    || |    || ||  | |  |||||||| || |  |  | || |||| ||||| || || |||||| | || || ||||| ||  || | |||||||||||||| || || ||||| ||||| ||||||||||| |||||||| |
-------------------------gttttat----aatttttaaaattttccatgaccaactgagtatatatgctat---------ccaatgagagacaacg--tgtaattccgtgttgctttggttttatc--tatgcagGAAGCTACTATTGAGCAACTTTTACCCATATTCCTATCACTGTTGAAGGATGAATTTCCAGACGTGCGGCTAAATATCATCAGCAAGCTAGATCAAGTCA

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 3'ss of exon 7
lower sequence: EFJ35758 (Selaginella moellendorffii), 3'ss of exon 6
gtcacaagcaaaatatcttcataaaattttacttgaaataattcaaattatttgtttgcaacagctttactgttcagttgtttactaccattgcttcacgattgttggaaacctgacttgctttgtttctggcattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA
                                                                                              |   | |||  ||       | | ||   || ||       | || |||| || ||||||||||| ||| | || || ||  |  |  |  | ||||||||||| ||||| ||| ||||||| || || |||||||| |||||||| |
---------------------------------------------------------------------------------------------gtaggcaattcgtgctctttcgtcctgtgctgattagtttggtttgcagGACGCGACAATCGAACAGCTTTTACCAATATTTTTGGCCCTTTTGAAGGATGAATTCCCTGACGTTAGGCTCAACATCATAAGCAAGCTGGATCAAGTCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58683974|gb|CK072661.1|CK072661
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|30226842|gb|CB964734.1|CB964734
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|300215963|gb|HO088589.1|HO088589
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGC
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGC
EST: gi|58654414|gb|CK043094.1|CK043094
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|86904336|gb|CI306754.1|CI306754
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCA
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCA
EST: gi|58652709|gb|CK041389.1|CK041389
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|38474762|gb|CF958895.1|CF958895
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|33654809|gb|CF277423.1|CF277423
EST:     TTCAGCTTTGGCTTCAGTTATTATGGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: TTCAGCTTTGGCTTCAGTTATTATGGG-AATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|58593044|gb|CF991352.1|CF991352
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|33796143|gb|CF323937.1|CF323937
EST:     TTCAGCTTTGGCTTCAGTTATTATGGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: TTCAGCTTTGGCTTCAGTTATTATGGG-AATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|29635602|gb|CB640611.1|CB640611
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|58598714|gb|CK009242.1|CK009242
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|218487576|gb|FG960599.1|FG960599
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTGCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|3768380|gb|AU032407.1|AU032407
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|58655438|gb|CK044118.1|CK044118
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|55409620|gb|CV721996.1|CV721996
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|33676187|gb|CF304426.1|CF304426
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|33656227|gb|CF278841.1|CF278841
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
EST: gi|58678838|gb|CK067525.1|CK067525
EST:     GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG                         GAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT
genomic: GTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgtcacaagca ... cattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattgcttcacgattgttggaaacctgacttgctttgtttctggcattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA
                       acctgac  putative branch site (score: 3)
                                  tttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcacaagcaaaatatcttcataaaattttacttgaaataattcaaattatttgtttgcaacagctttactgttcagttgtttactaccattgcttcacgattgttggaaacctgacttgctttgtttctggcattctgtagGAGGCTACAATCGAACAACTTCTTCCTATTTTCCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGGCTCAATATAATCAGCAAGCTCGATCAAGTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT