1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttaaacctgctcgctttgctagctgcgatcacatcttttttttttttttgcattctttgactgtctcgaattgcatatcgcagCACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAACAACCAGGACGAGGTTCTCAGGTTGCTGGAAAAGGATGCCTTCCTGTAG
species | Oryza sativa |
transcript | LOC_Os08g42690.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATGGTATGAAGGGGTGCGTGGATCTTCTGCTGAAGAACGGAGCCGCTGT CACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAAEST: gi|86538616|gb|CI178822.1|CI178822
genomic: TATGGTATGAAGGGGTGCGTGGATCTTCTGCTGAAGAACGGAGCCGCTGTgtaagttaaa ... catatcgcagCACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAA
EST: TATGGTATGAAGGGGTGCGTGGATCTTCTGCTGAAGAACGGAGCCGCTGT CACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAA
genomic: TATGGTATGAAGGGGTGCGTGGATCTTCTGCTGAAGAACGGAGCCGCTGTgtaagttaaa ... catatcgcagCACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAA
tcacatcttttttttttttttgcattctttgactgtctcgaattgcatatcgcagCACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAACAACCAGGACGAGGTTCTCAGGTTGCTGGAAAAGGATGCCTTCCTGTAG
ctttgac putative branch site (score: 4)
ttttttttttttttgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttaaacctgctcgctttgctagctgcgatcacatcttttttttttttttgcattctttgactgtctcgaattgcatatcgcagCACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAACAACCAGGACGAGGTTCTCAGGTTGCTGGAAAAGGATGCCTTCCTGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG