1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaacttttttttggtgccattgtctttattatatttcttgccagttttcttatttctaccaaaatgacaactttgttttatggacttcatgctcggtctgacagGCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAGGGAGAAACAAATTTCCAAGTGTGTACTCTTGGAAAGGATGTGGTAATAA
species | Oryza sativa |
transcript | LOC_Os08g42560.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTTTTAAGGGGAACCAAAAGATGGTGGTTGAAGCATTGGAG GCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAGEST: gi|58668733|gb|CK057419.1|CK057419
genomic: GCTTTTAAGGGGAACCAAAAGATGGTGGTTGAAGCATTGGAGgtaacttttt ... ggtctgacagGCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAG
EST: TGGGGCTTGCTTTTAAGGGGAACCAAAAGATGGTGGTTGAAGCATTGGAG GCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAGEST: gi|58684734|gb|CK073421.1|CK073421
genomic: TGGGGCTTGCTTTTAAGGGGAACCAAAAGATGGTGGTTGAAGCATTGGAGgtaacttttt ... ggtctgacagGCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAG
EST: TGGGGCTTGCTTTTAAGGGGAACCAAAAGATGGTGGTTGAAGCATTGGAG GCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAGEST: gi|4715424|gb|AU056541.1|AU056541
genomic: TGGGGCTTGCTTTTAAGGGGAACCAAAAGATGGTGGTTGAAGCATTGGAGgtaacttttt ... ggtctgacagGCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAG
EST: TGGGGCTTGCTTTTAAGGGGAACCAAAAGATGGTGGTTGAAGCATTGGAG GCTATGAGTGGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAEST: gi|58662078|gb|CK050758.1|CK050758
genomic: TGGGGCTTGCTTTTAAGGGGAACCAAAAGATGGTGGTTGAAGCATTGGAGgtaacttttt ... ggtctgacagGCTATGAGTG-AGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAA
EST: TGGGGCTTGCTTTTAAGGGGAACCAAAAGATGGTGGTTGAAGCATTGGAG GCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAGEST: gi|33677376|gb|CF305615.1|CF305615
genomic: TGGGGCTTGCTTTTAAGGGGAACCAAAAGATGGTGGTTGAAGCATTGGAGgtaacttttt ... ggtctgacagGCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAG
EST: GGGGAACCAAAAGATGGTGGTTGAAGCATTGGAG GCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAGEST: gi|33682738|gb|CF310977.1|CF310977
genomic: GGGGAACCAAAAGATGGTGGTTGAAGCATTGGAGgtaacttttt ... ggtctgacagGCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAG
EST: ATGGTGGTTGAAGCATTGGAG GCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAG
genomic: ATGGTGGTTGAAGCATTGGAGgtaacttttt ... ggtctgacagGCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAG
ttatttctaccaaaatgacaactttgttttatggacttcatgctcggtctgacagGCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAGGGAGAAACAAATTTCCAAGTGTGTACTCTTGGAAAGGATGTGGTAATAA
tttgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttttttttggtgccattgtctttattatatttcttgccagttttcttatttctaccaaaatgacaactttgttttatggacttcatgctcggtctgacagGCTATGAGTGAGAAAGAAGCAATGGACATGAAAGCTGCTCTTGAATCTAAGGGAGAAACAAATTTCCAAGTGTGTACTCTTGGAAAGGATGTGGTAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG