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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggatttgaaatctagtcctcggtttctgatgcattctatcttatattttaactaatgtggttactttgtatgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG

Basic information

species Oryza sativa
transcript LOC_Os08g41460.6
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29625905|gb|CB630916.1|CB630916
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|86886375|gb|CI336078.1|CI336078
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33675916|gb|CF304155.1|CF304155
EST:     AGACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33824610|gb|CF338118.1|CF338118
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33684521|gb|CF312760.1|CF312760
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|3763529|gb|AU030281.1|AU030281
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|86600810|gb|CI356567.1|CI356567
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33682743|gb|CF310982.1|CF310982
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33684081|gb|CF312320.1|CF312320
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|58592436|gb|CF990744.1|CF990744
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|29683116|gb|CB679391.1|CB679391
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTTTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|86418696|gb|CI053497.1|CI053497
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33676725|gb|CF304964.1|CF304964
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|29684942|gb|CB681217.1|CB681217
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|88663007|gb|CI474494.1|CI474494
EST:     CTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: CTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|86872975|gb|CI326972.1|CI326972
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33681150|gb|CF309389.1|CF309389
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33675090|gb|CF303329.1|CF303329
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|88852696|gb|CI008889.1|CI008889
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|86435935|gb|CI107168.1|CI107168
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|88256514|gb|CI358902.1|CI358902
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|88258912|gb|CI359302.1|CI359302
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|88250785|gb|CI349015.1|CI349015
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|15855565|gb|BI808377.1|BI808377
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|87029164|gb|CI276432.1|CI276432
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33676087|gb|CF304326.1|CF304326
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|29662553|gb|CB658828.1|CB658828
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|88383490|gb|CI543263.1|CI543263
EST:     AAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: AAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|29683115|gb|CB679390.1|CB679390
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|89181923|gb|CI113429.1|CI113429
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|25806680|gb|CA762641.1|CA762641
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|86843718|gb|CI339709.1|CI339709
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|29663222|gb|CB659497.1|CB659497
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|86889949|gb|CI319938.1|CI319938
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGT-TTAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|15854892|gb|BI807704.1|BI807704
EST:     TACTGTCTGTGCCTAGCGGTGGTGCAAGAAACACGTGTGAAATGTGCAAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCC
genomic: TACTGTCTGTGCCTAGCGGTGGTGCAAGAAACA-GTGTGAAATGTGC-AAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCC
EST: gi|86873804|gb|CI341237.1|CI341237
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33675688|gb|CF303927.1|CF303927
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|86869681|gb|CI322167.1|CI322167
EST:     TACTGTCTGTGCCTAGGCGGTGGTGCAAGAAACAGTGTGAAATGTCCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: TACTGTCTGTGCCTA-GCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|29615644|gb|CB620656.1|CB620656
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33675365|gb|CF303604.1|CF303604
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|88257341|gb|CI359729.1|CI359729
EST:     ATACTGTCTGTGCCTAGCGGT-GTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|88259834|gb|CI364325.1|CI364325
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33675509|gb|CF303748.1|CF303748
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33675427|gb|CF303666.1|CF303666
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|86490518|gb|CI133151.1|CI133151
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|88253111|gb|CI351737.1|CI351737
EST:     ATACTGTCTGTGCCTACCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|88258920|gb|CI359310.1|CI359310
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|86505080|gb|CI147713.1|CI147713
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|88966192|gb|CI013068.1|CI013068
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|88257914|gb|CI360500.1|CI360500
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|88253931|gb|CI352557.1|CI352557
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33672699|gb|CF300938.1|CF300938
EST:     AGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: AGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|86489048|gb|CI131681.1|CI131681
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
EST: gi|33675483|gb|CF303722.1|CF303722
EST:     ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA                         TTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC
genomic: ATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAgtatggattt ... tgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatgcattctatcttatattttaactaatgtggttactttgtatgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG
                        aactaat  putative branch site (score: 2)
       attctatcttatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggatttgaaatctagtcctcggtttctgatgcattctatcttatattttaactaatgtggttactttgtatgtttatcagTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA