1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgattatcacctgaagtttcatttgtaaactgatgtccagtcctacagttgcacctagtgttttgtcctattatcactcatgatatttttctcaatgcagGAAGCTGAGACTGCTATAACTGAAATGACTG
species | Oryza sativa |
transcript | LOC_Os08g40880.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
cagttgcacctagtgttttgtcctattatcactcatgatatttttctcaatgcagGAAGCTGAGACTGCTATAACTGAAATGACTG
tatttttctc CT-rich tract
atatttttctcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattatcacctgaagtttcatttgtaaactgatgtccagtcctacagttgcacctagtgttttgtcctattatcactcatgatatttttctcaatgcagGAAGCTGAGACTGCTATAACTGAAATGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - -cctgaag
- - - - - - - - tttcatt
- - - - - - - - - - - - - - -ctgatgt
- - - - - - - - - - - - - - - - - - - - -cctacag
- - - - - - - - - - - - - - - - - - - - - - - - ttgcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgat