1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...attcaattcctagggcatatataatgatgaaatttgaaatctctctaatcatgtccaaattatcatgaacttattttctttgtgtttgattgttttgcagGTATAAGAATTTTTGAAGATATTGCAAACACAAAG
species | Oryza sativa |
transcript | LOC_Os08g34060.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATG GTATAAGAATTTTTGAAGATATTGCAAACACAAAGEST: gi|29622066|gb|CB627077.1|CB627077
genomic: TGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATGgtatccttac ... tgttttgcagGTATAAGAATTTTTGAAGATATTGCAAACACAAAG
EST: TGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATG GTATAAGAATTTTTGAAGATATTGCAAACACAAAGEST: gi|29626394|gb|CB631405.1|CB631405
genomic: TGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATGgtatccttac ... tgttttgcagGTATAAGAATTTTTGAAGATATTGCAAACACAAAG
EST: TGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATG GTATAAGAATTTTTGAAGATATTGCAAACACAAAG
genomic: TGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATGgtatccttac ... tgttttgcagGTATAAGAATTTTTGAAGATATTGCAAACACAAAG
taatcatgtccaaattatcatgaacttattttctttgtgtttgattgttttgcagGTATAAGAATTTTTGAAGATATTGCAAACACAAAG
ttgtttt CT-rich tract
aaattatcatgaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcaattcctagggcatatataatgatgaaatttgaaatctctctaatcatgtccaaattatcatgaacttattttctttgtgtttgattgttttgcagGTATAAGAATTTTTGAAGATATTGCAAACACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA