1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttatctgtcacttggcatccttagtgcacatagtcacgtacagttgctgacccttccagatttcacattttaaaatacaactcttctgtccttatccaagATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGTGCTCGTGGATTTGACAGAAATACAACAAGTGACATTATTTTCAGTAGCT
species | Oryza sativa |
transcript | LOC_Os08g32630.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAG ATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGTEST: gi|29670150|gb|CB666425.1|CB666425
genomic: GTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAGgtattcctga ... cttatccaagATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGT
EST: CCCAATTGTGCGACAG ATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGTEST: gi|300215548|gb|HO088174.1|HO088174
genomic: CCCAATTGTGCGACAGgtattcctga ... cttatccaagATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGT
EST: GTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAG ATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGTEST: gi|58656158|gb|CK044838.1|CK044838
genomic: GTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAGgtattcctga ... cttatccaagATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGT
EST: GTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAG ATCCGGTCAGGCAGAAAACCGAGATGGAGTATGCCTTGTTGTTGGTACTTG
genomic: GTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAGgtattcctga ... cttatccaagATCCGGTCAGGCAGAAAACC-AGATGGAGTATGCCTTGTTGTTGGTACTTG
gctgacccttccagatttcacattttaaaatacaactcttctgtccttatccaagATCCGGTCAGGCAGAAAACCAGATGGAGTATGCCTTGTTGTTGGTACTTGTGCTCGTGGATTTGACAGAAATACAACAAGTGACATTATTTTCAGTAGCT
tgctgac putative branch site (score: 2)
ctcttctgtccttatc putative PPT
atttcacattttaaaa TA-rich tract