1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaagtattgatcaaagaaccattggatgcttgtaactctgaaatgggcattctttcttcatcacctttgttcttaagtctaaacaactgtcttaccttgcagTTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGACCGTGTAATTGCTGATGGGACCCTTCTGGACTTCTTGCGCCAGGTGTCTA
species | Oryza sativa |
transcript | LOC_Os08g27840.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAG TTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGACEST: gi|29629554|gb|CB634563.1|CB634563
genomic: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAGgtaaagtatt ... taccttgcagTTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGAC
EST: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAG TTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGACEST: gi|29629584|gb|CB634593.1|CB634593
genomic: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAGgtaaagtatt ... taccttgcagTTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGAC
EST: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAG TTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGACEST: gi|29635424|gb|CB640433.1|CB640433
genomic: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAGgtaaagtatt ... taccttgcagTTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGAC
EST: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAG TTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGACEST: gi|29634929|gb|CB639938.1|CB639938
genomic: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAGgtaaagtatt ... taccttgcagTTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGAC
EST: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAG TTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGACEST: gi|29630865|gb|CB635874.1|CB635874
genomic: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAGgtaaagtatt ... taccttgcagTTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGAC
EST: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAG TTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGACEST: gi|29629203|gb|CB634214.1|CB634214
genomic: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAGgtaaagtatt ... taccttgcagTTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGAC
EST: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAG TTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGAC
genomic: GCGGATATTCTGACATTCCTGAAGAAACCACTCTCACCAGTGTTGAACAGgtaaagtatt ... taccttgcagTTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGAC
cattctttcttcatcacctttgttcttaagtctaaacaactgtcttaccttgcagTTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGACCGTGTAATTGCTGATGGGACCCTTCTGGACTTCTTGCGCCAGGTGTCTA
gtcttac putative branch site (score: 29)
tcttacctt CT-rich tract
ttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtattgatcaaagaaccattggatgcttgtaactctgaaatgggcattctttcttcatcacctttgttcttaagtctaaacaactgtcttaccttgcagTTCTTAGAGCCTCTGGAGCTATGTTACAGGTCACTCTGCGATTGCGGTGACCGTGTAATTGCTGATGGGACCCTTCTGGACTTCTTGCGCCAGGTGTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT