1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gaatttagaccagttcttgctgctcacatgatttaaccgaatctatctatggaaacaaataatgtatctatgcttacaccattggccttgacatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAGTCGAGCCAGCAAGAATGGCGATAGCAGCCGGCATGTCTGACGGGTTGT
species | Oryza sativa |
transcript | LOC_Os08g26870.5 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|84117164|gb|CD150931.1|CD150931
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|29629366|gb|CB634377.1|CB634377
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAEST: gi|58605333|gb|CK033366.1|CK033366
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG GTTCCTATACAAGTCCATAGAAGC
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGC
tctatggaaacaaataatgtatctatgcttacaccattggccttgacatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAGTCGAGCCAGCAAGAATGGCGATAGCAGCCGGCATGTCTGACGGGTTGT
aaacaaataatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatttagaccagttcttgctgctcacatgatttaaccgaatctatctatggaaacaaataatgtatctatgcttacaccattggccttgacatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAGTCGAGCCAGCAAGAATGGCGATAGCAGCCGGCATGTCTGACGGGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - -tgctgct
- - - - - - - - - - - - -acatgat
- - - - - - - - - - - - - - - - - aaccgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttac