Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaatttagaccagttcttgctgctcacatgatttaaccgaatctatctatggaaacaaataatgtatctatgcttacaccattggccttgacatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAGTCGAGCCAGCAAGAATGGCGATAGCAGCCGGCATGTCTGACGGGTTGT

Basic information

species Oryza sativa
transcript LOC_Os08g26870.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g26870.4 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G006468_T05 (Zea mays), 3'ss of exon 6
--gaatttagaccagttcttgctgctcacatgatttaaccga--atctatctatg-gaaacaaataatgtatctatgcttacaccattggccttgacatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAGTCGAGCCAGCAAGAATGGCGATAGCAGCCGGCATGTCTGACGGGTTGT
   ||| | ||  |    ||| || |   |||  || |      ||  ||  ||| || ||   |    | || ||  |||   |||     ||| ||||||||||||||| |||||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||  ||||||| ||| | || || |||||||
tgtaatcttgagaaacatttgatggtagtatgggttcatttgtcatgcatacatgtgacacttttttattctccatatttatttcat-----ttggcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAGTCGAGCCAGCAAGAATGGCAGTAGCAGCTGGCCTATCAGATGGGTTGT

upper sequence: LOC_Os08g26870.4 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G053531_T02 (Zea mays), 3'ss of exon 7
gaatttagaccagttcttgctgctcacatgatttaaccgaatctatctatggaaacaaataat-----gtatctatgcttacaccattggccttgacatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAGTCGAGCCAGCAAGAATGGCGATAGCAGCCGGCATGTCTGACGGGTTGT
     || || | |  | |  |      |   ||   |     ||  | |||||     | ||      ||| ||||         ||   |||| || |||||||||||| |||||||||||||||| ||||||||||||||||| || ||| ||||||||||||||||||||||  || |||| ||| | || || |||||||
-----taaacaattgatggtagtgtgggtttatttgtcatgcatacatgtggaacttttttattcttgatatttatgtcattcttgtttcacttggcaagaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGATGGGATTAGACCAGTCGAGCCAGCAAGAATGGCAGTAACAGCTGGCCTATCAGATGGGTTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30228242|gb|CB966133.1|CB966133
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86428772|gb|CI075453.1|CI075453
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29660675|gb|CB656950.1|CB656950
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29659550|gb|CB655825.1|CB655825
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|27920437|gb|CB096245.1|CB096245
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACGAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|109974602|gb|DT806998.1|DT806998
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86841671|gb|CI337368.1|CI337368
EST:     AGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: AGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86870797|gb|CI323841.1|CI323841
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACA-TGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29629367|gb|CB634378.1|CB634378
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|88831948|gb|CI014507.1|CI014507
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29663843|gb|CB660118.1|CB660118
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|3767979|gb|AU032006.1|AU032006
EST:     CCTTTGATCTAAGACCTTCAGATNCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAANCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86845296|gb|CI340393.1|CI340393
EST:     TTCGCTGC-A-                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: TTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|88217099|gb|CI216948.1|CI216948
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29659488|gb|CB655763.1|CB655763
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|88844616|gb|CI021191.1|CI021191
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86545503|gb|CI185709.1|CI185709
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86486764|gb|CI129397.1|CI129397
EST:     TCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: TCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86424485|gb|CI063246.1|CI063246
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|88843827|gb|CI011085.1|CI011085
EST:     AGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: AGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29670738|gb|CB667013.1|CB667013
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86433857|gb|CI094200.1|CI094200
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29675966|gb|CB672241.1|CB672241
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTTGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|89161725|gb|CI100885.1|CI100885
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|88964523|gb|CI055219.1|CI055219
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86881486|gb|CI322571.1|CI322571
EST:     AAGACCGTCAGATGCCATAAACAGTGGCTGTTCGCTGCAA-                         GTTCCTATACAA-TCCATAGAAGCCTT-CATACAGTGATGGCATAAGATCA
genomic: AAGACCTTCAGATGCCATAAACA-TTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29671385|gb|CB667660.1|CB667660
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29667115|gb|CB663390.1|CB663390
EST:     ATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: ATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|218504708|gb|FG953263.1|FG953263
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|84117164|gb|CD150931.1|CD150931
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29659844|gb|CB656119.1|CB656119
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|89194098|gb|CI116535.1|CI116535
EST:     ATCTAAGACCTTCAGATGCCATGAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: ATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86535591|gb|CI175797.1|CI175797
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29669212|gb|CB665487.1|CB665487
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|88221407|gb|CI221363.1|CI221363
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29664873|gb|CB661148.1|CB661148
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|33656426|gb|CF279040.1|CF279040
EST:     CTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|88219539|gb|CI219099.1|CI219099
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86866657|gb|CI343508.1|CI343508
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|89182212|gb|CI113581.1|CI113581
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|30228832|gb|CB966723.1|CB966723
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86853630|gb|CI330481.1|CI330481
EST:     TCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: TCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|89182723|gb|CI114092.1|CI114092
EST:     TTTGATCTAAGACCTTCAGATGACATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGAGTC
genomic: TTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGA-TC
EST: gi|23514436|gb|BU673639.1|BU673639
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCNTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29657113|gb|CB653388.1|CB653388
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|89175204|gb|CI111723.1|CI111723
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29678163|gb|CB674438.1|CB674438
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|22306513|gb|BQ907735.1|BQ907735
EST:     CCTGTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTC-CTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86522948|gb|CI163154.1|CI163154
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29658491|gb|CB654766.1|CB654766
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86841645|gb|CI337352.1|CI337352
EST:     AGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: AGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86884643|gb|CI313022.1|CI313022
EST:     TAAGACCTTCAGATGCCATAAACATTGCTGTTCGGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATC
genomic: TAAGACCTTCAGATGCCATAAACATTGCTGTTC-GCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATC
EST: gi|86418718|gb|CI053519.1|CI053519
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|88833609|gb|CI077090.1|CI077090
EST:     AAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATC
genomic: AAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCC-TATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATC
EST: gi|29629366|gb|CB634377.1|CB634377
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|58030519|gb|CX728062.1|CX728062
EST:     ATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: ATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29668681|gb|CB664956.1|CB664956
EST:     CCTTTGATTTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29660157|gb|CB656432.1|CB656432
EST:     CCTTTGATTTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29669928|gb|CB666203.1|CB666203
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29672180|gb|CB668455.1|CB668455
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86535529|gb|CI175735.1|CI175735
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|86867122|gb|CI343891.1|CI343891
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|15855809|gb|BI808621.1|BI808621
EST:     TGTGATGCTAAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: TTTGAT-CT-AAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|29657533|gb|CB653808.1|CB653808
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
EST: gi|58605333|gb|CK033366.1|CK033366
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGC
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGC
EST: gi|29659233|gb|CB655508.1|CB655508
EST:     CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAG                         GTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA
genomic: CCTTTGATCTAAGACCTTCAGATGCCATAAACATTGCTGTTCGCTGCAAGgtattatttt ... acatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatggaaacaaataatgtatctatgcttacaccattggccttgacatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAGTCGAGCCAGCAAGAATGGCGATAGCAGCCGGCATGTCTGACGGGTTGT
       aaacaaataatgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaatttagaccagttcttgctgctcacatgatttaaccgaatctatctatggaaacaaataatgtatctatgcttacaccattggccttgacatgaacagGTTCCTATACAAGTCCATAGAAGCCTTGCATACAGTGATGGCATAAGATCAGTCGAGCCAGCAAGAATGGCGATAGCAGCCGGCATGTCTGACGGGTTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA