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...tattttacaagttactaattcctaagttcttttttatccatttgttttatcactggtacactatggttttcatatatgtttcctgctcaataatccatagGAATATAAACATCTGCTAGAAGAGGCTAAGAAGCGTGATCATAGGCTATTAGGACAGACCCAGGATCTCTTCTTTTTCCATCAACTTAG
species | Oryza sativa |
transcript | LOC_Os08g19850.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCCTGCAGAGAGTATATGGAATTTCTTTTCCTGATTCTAAACGTCTCAAG GAATACAAACATCTGCTAGAAGAGGCTAAGAAGCGTGATCATAGGCTATTAEST: gi|58689159|gb|CK077846.1|CK077846
genomic: GCCTGCAGAGAGTATATGGAATTTCTTTTCCTGATTCTAAACGTCTCAAGgtatagcata ... taatccatagGAATATAAACATCTGCTAGAAGAGGCTAAGAAGCGTGATCATAGGCTATTA
EST: GCCTGCAGAGAGTATATGGAATTTCTTTTCCTGATTCTAAACGTCTCAAG GAATACAAACATCTGCTAGAEST: gi|58688358|gb|CK077045.1|CK077045
genomic: GCCTGCAGAGAGTATATGGAATTTCTTTTCCTGATTCTAAACGTCTCAAGgtatagcata ... taatccatagGAATATAAACATCTGCTAGA
EST: GCCTGCAGAGAGTATATGGAATTTCTTTTCCTGATTCTAAACGTCTCAAG GAATACAAACATCTGCTAGAAGAGGCTAAGAAGCGTGATCATAGGCTATTAEST: gi|29686166|gb|CB682441.1|CB682441
genomic: GCCTGCAGAGAGTATATGGAATTTCTTTTCCTGATTCTAAACGTCTCAAGgtatagcata ... taatccatagGAATATAAACATCTGCTAGAAGAGGCTAAGAAGCGTGATCATAGGCTATTA
EST: GCCTGCAGAGAGTATATGGAATTTCTTTTCCTGATTCTAAACGTCTCAAG GAATATAAACATCTGCTAGAAGAGGCTAAAAAGCGTGATCATAGGCTATTA
genomic: GCCTGCAGAGAGTATATGGAATTTCTTTTCCTGATTCTAAACGTCTCAAGgtatagcata ... taatccatagGAATATAAACATCTGCTAGAAGAGGCTAAGAAGCGTGATCATAGGCTATTA
tttatcactggtacactatggttttcatatatgtttcctgctcaataatccatagGAATATAAACATCTGCTAGAAGAGGCTAAGAAGCGTGATCATAGGCTATTAGGACAGACCCAGGATCTCTTCTTTTTCCATCAACTTAG
ttttcatatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttacaagttactaattcctaagttcttttttatccatttgttttatcactggtacactatggttttcatatatgtttcctgctcaataatccatagGAATATAAACATCTGCTAGAAGAGGCTAAGAAGCGTGATCATAGGCTATTAGGACAGACCCAGGATCTCTTCTTTTTCCATCAACTTAG
- - - - - - - - - - - - - - - - - - -ccatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - ctggtac