1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgttttacaacacattattctgcaattcctccctgatgaatgcatatgggaatatctgatggaattaacttacaaaagcctggtttgattcttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCC
species | Oryza sativa |
transcript | LOC_Os08g15040.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|88560826|gb|CI491521.1|CI491521
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: CATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|88906338|gb|CI375410.1|CI375410
genomic: CATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|86844287|gb|CI337645.1|CI337645
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|86527922|gb|CI168128.1|CI168128
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: AGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|89162128|gb|CI103664.1|CI103664
genomic: AGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|88239417|gb|CI240579.1|CI240579
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|86879835|gb|CI339947.1|CI339947
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|88243558|gb|CI243955.1|CI243955
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|2800167|gb|AA753156.1|AA753156
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: GAGAGGGCCTTTTTGAANGTTTGGACTG GCTCNTTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|88465078|gb|CI514850.1|CI514850
genomic: GAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|86434337|gb|CI094680.1|CI094680
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|88502850|gb|CI430356.1|CI430356
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|27547712|gb|CA765788.2|CA765788
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|86511016|gb|CI153649.1|CI153649
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|88200314|gb|CI200164.1|CI200164
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCGAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|88459095|gb|CI514376.1|CI514376
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: GAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|88319099|gb|CI513163.1|CI513163
genomic: GAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCNAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|33682863|gb|CF311102.1|CF311102
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCEST: gi|88468492|gb|CI514974.1|CI514974
genomic: TGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
EST: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTG GCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
genomic: TTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcaca ... cttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTC
atgggaatatctgatggaattaacttacaaaagcctggtttgattcttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCC
ttcttgct CT-rich tract
aattaacttacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttacaacacattattctgcaattcctccctgatgaatgcatatgggaatatctgatggaattaacttacaaaagcctggtttgattcttgctgcagGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC