1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaatgatcctattttccttctctagcttataaaattaattttacattttaatgttcgtttctgtaaaatttttgttgcagGGATTCTCAGAGGTACGGAATGCCTAGACCTACCTCTCTGCAGGGTGATGAGCAACAAAGAATCCAGTACAATCAGATGCTCAACAGCAGAAGTCTTCAG
species | Oryza sativa |
transcript | LOC_Os08g08000.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGGTTTTAGGCAATACTTTGCCATCACCTTCAACACCAAATACTCCTAG GGATTCTCAGAGGTACGGAATGCCTAGACCTACCTCTCTGCAGGGTGATGAEST: gi|58672268|gb|CK060954.1|CK060954
genomic: ATGGTTTTAGGCAATACTTTGCCATCACCTTCAACACCAAATACTCCTAGgtaaatgatc ... tttgttgcagGGATTCTCAGAGGTACGGAATGCCTAGACCTACCTCTCTGCAGGGTGATGA
EST: ATGGTTTTAGGCAATACTTTGCCATCACCTTCAACACCAAATACTCCTAG GGATTCTCAGAGGTACGGAATGCCTAGACCTACCTCTCTGCAGGGTGATGAEST: gi|58673489|gb|CK062175.1|CK062175
genomic: ATGGTTTTAGGCAATACTTTGCCATCACCTTCAACACCAAATACTCCTAGgtaaatgatc ... tttgttgcagGGATTCTCAGAGGTACGGAATGCCTAGACCTACCTCTCTGCAGGGTGATGA
EST: ATGGTTTTAGGCAATACTTTGCCATCACCTTCAACACCAAATACTCCTAG GGATTCTCAGAGGTACGGAATGCCTAGACCTACCTCTCTGCAGGGTGATGAEST: gi|29644348|gb|CB649355.1|CB649355
genomic: ATGGTTTTAGGCAATACTTTGCCATCACCTTCAACACCAAATACTCCTAGgtaaatgatc ... tttgttgcagGGATTCTCAGAGGTACGGAATGCCTAGACCTACCTCTCTGCAGGGTGATGA
EST: ATGGTTTTAGGCAATACTTTGCCATCACCTTCAACACCAAATACTCCTAG GGATTCTCAGAGGTACGGAATGCCTAGACCTACCTCTCTGCAGGGTGATGAEST: gi|29682147|gb|CB678422.1|CB678422
genomic: ATGGTTTTAGGCAATACTTTGCCATCACCTTCAACACCAAATACTCCTAGgtaaatgatc ... tttgttgcagGGATTCTCAGAGGTACGGAATGCCTAGACCTACCTCTCTGCAGGGTGATGA
EST: ATGGTTTTAGGCAATACTTTGCCATCACCTTCAACACCAAATACTCCTAG GGATTCTCAGAGGTACGGAATGCCTAGACCTACCTCTCTGCAGGGTGATGA
genomic: ATGGTTTTAGGCAATACTTTGCCATCACCTTCAACACCAAATACTCCTAGgtaaatgatc ... tttgttgcagGGATTCTCAGAGGTACGGAATGCCTAGACCTACCTCTCTGCAGGGTGATGA
cttataaaattaattttacattttaatgttcgtttctgtaaaatttttgttgcagGGATTCTCAGAGGTACGGAATGCCTAGACCTACCTCTCTGCAGGGTGATGAGCAACAAAGAATCCAGTACAATCAGATGCTCAACAGCAGAAGTCTTCAG
ttttaat putative branch site (score: 20)
tttttgtt putative PPT
aaaattaattttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgatcctattttccttctctagcttataaaattaattttacattttaatgttcgtttctgtaaaatttttgttgcagGGATTCTCAGAGGTACGGAATGCCTAGACCTACCTCTCTGCAGGGTGATGAGCAACAAAGAATCCAGTACAATCAGATGCTCAACAGCAGAAGTCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT