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...acttagaataaattccacattacaatattcagaaataattactgtagatcggatcactttgtgaagtgcatttaaactggttgctcatcatttttttaagGCGCAGAGCTCATGGACAAAGCGCGCTGTTGAGATTGACAGTCCACAGGCTATGTCTCCAGATCAATTAGCTGATCCACCTGATAGCACTTGTGCACAAG
species | Oryza sativa |
transcript | LOC_Os07g49460.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCATGGGACTTAATGCAAGAGATGGCAGTGATAACGGCAGTGGCACTCAA GCGCAGAGCTCATGGACAAAGCGCGCTGTTGAGATTGACAGTCCACAGGCTEST: gi|33794538|gb|CF323156.1|CF323156
genomic: TCATGGGACTTAATGCAAGAGATGGCAGTGATAACGGCAGTGGCACTCAAgtatgaaact ... tttttttaagGCGCAGAGCTCATGGACAAAGCGCGCTGTTGAGATTGACAGTCCACAGGCT
EST: TCATGGGACTTAATGCAAGAGATGGCAGTGATAACGGCAGTGGCACTCAA GCGCAGAGCTCATGGACAAAGCGCGCTGTTGAGATTGACAGTCCACAGGCTEST: gi|58611601|gb|CK039313.1|CK039313
genomic: TCATGGGACTTAATGCAAGAGATGGCAGTGATAACGGCAGTGGCACTCAAgtatgaaact ... tttttttaagGCGCAGAGCTCATGGACAAAGCGCGCTGTTGAGATTGACAGTCCACAGGCT
EST: TCATGGGACTTAATGCAAGAGATGGCAGTGATAACGGCAGTGGCACTCAA GCGCAGAGCTCATGGACAAAGCGCGCTGTTGAGATTGACAGTCCACAGGCTEST: gi|88978654|gb|CI384995.1|CI384995
genomic: TCATGGGACTTAATGCAAGAGATGGCAGTGATAACGGCAGTGGCACTCAAgtatgaaact ... tttttttaagGCGCAGAGCTCATGGACAAAGCGCGCTGTTGAGATTGACAGTCCACAGGCT
EST: TCATGGGACTTAATGCAAGAGATGGCAGTGATAACGGCAGTGCCACTCAA GCGCAGAGCTCATGGACAAAGCGCGCTTTTGAGATTGACAGTCCACAGGCT
genomic: TCATGGGACTTAATGCAAGAGATGGCAGTGATAACGGCAGTGGCACTCAAgtatgaaact ... tttttttaagGCGCAGAGCTCATGGACAAAGCGCGCTGTTGAGATTGACAGTCCACAGGCT
agatcggatcactttgtgaagtgcatttaaactggttgctcatcatttttttaagGCGCAGAGCTCATGGACAAAGCGCGCTGTTGAGATTGACAGTCCACAGGCTATGTCTCCAGATCAATTAGCTGATCCACCTGATAGCACTTGTGCACAAG
ctcatcattttttt CT-rich tract
tcatcatttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttagaataaattccacattacaatattcagaaataattactgtagatcggatcactttgtgaagtgcatttaaactggttgctcatcatttttttaagGCGCAGAGCTCATGGACAAAGCGCGCTGTTGAGATTGACAGTCCACAGGCTATGTCTCCAGATCAATTAGCTGATCCACCTGATAGCACTTGTGCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -gaataaa
- - - - - - - - - - - - - - - -gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc