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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgggctgttctcccagatccgtgaattataaactgtcaattcaagtctagattggctgaccccctgtgtatgtatgatggcagGTTTCAGGAATCAAATGCTCGATGCGGTGAGGGGTTTCTCCGGCGCAAGGCAGAACGGTCTTTTTATCAACTCCTGTTTCGCACATTGCCAAAGTGAGAG

Basic information

species Oryza sativa
transcript LOC_Os07g44070.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g44070.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G160569_T03 (Zea mays), 3'ss of exon 6
gtactgggctgttctcccagatccgtgaa-ttataaactgtcaatt----caagtctagattggctgaccccctgtgtatgtatgatggcagGTTTCAGGAATCAAATGCTCGATGCGGTGAGGGGTTTCTCCGGCGCAAGGCAGAACGGTCTTTTTATCAACTCCTGTTTCGCACATTGCCAAAGTGAGAG
||  |    || |  | ||| |   | |  || |||    |||| |     ||| | || |  ||||| |  ||||| |||    ||| |||| |||||||| || ||||| ||||| |||||||||||||| |   ||||||| || ||||| || |||||||| ||||| || |||||||| || |||||
gtgtttcattgattcctcagttgtttcaggttgtaattgatcaactaaattaaggcaagttcagctgatcttctgtgcatg----atg-cagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGCAAAATGGTCTGTTCATCAACTCATGTTTTGCTCATTGCCAGAGCGAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29685047|gb|CB681322.1|CB681322
EST:     TAGGATGAATCATGCCTCCTGTAATAGCAACCAACTGCAATTTTTACAAG                         GTTTCAGGAATCAAATGCTCGATGCGGTGAGGGGTTTCTCCGGCGCAAGGC
genomic: TAGGATGAATCATGCCTCCTGTAATAGCAACCAACTGCAATTTTTACAAGgtactgggct ... atgatggcagGTTTCAGGAATCAAATGCTCGATGCGGTGAGGGGTTTCTCCGGCGCAAGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaactgtcaattcaagtctagattggctgaccccctgtgtatgtatgatggcagGTTTCAGGAATCAAATGCTCGATGCGGTGAGGGGTTTCTCCGGCGCAAGGCAGAACGGTCTTTTTATCAACTCCTGTTTCGCACATTGCCAAAGTGAGAG
                         ggctgac  putative branch site (score: 3)
         aattcaa  TA-rich tract