1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttagtattaaatgcttttaagtattcatatagtattaaatagtggaattgccggaccatgtttcttacttgatggcagaagttgaacaatttaagcagGCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGAATAATGGATTTTGAAGAGGACCGCATCCGACCAAAAAG
species | Oryza sativa |
transcript | LOC_Os07g30840.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCAGAAAGAGTTCGAAGACAAGGTAGAAGAAGCCNNNNNNNTCAATCAAG GCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGEST: gi|86601452|gb|CI253780.1|CI253780
genomic: CCAGAAAGAGTTCGAAGACAAGGTAGAAGAAGCCAAAAAA-TCAATCAAGgtgagttgga ... atttaagcagGCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGG
EST: ACCAGAAAGAGTTCGAAGACAAGGTAGAAGAAGCCAAAAAATCAATCAAG GCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGAEST: gi|88958207|gb|CI095726.1|CI095726
genomic: ACCAGAAAGAGTTCGAAGACAAGGTAGAAGAAGCCAAAAAATCAATCAAGgtgagttgga ... atttaagcagGCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGA
EST: ACCAGAAAGAGTTCGAAGACAAGGTAGAAGAAGCCAAAAAATCAATCAAG GCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGAEST: gi|89195934|gb|CI007353.1|CI007353
genomic: ACCAGAAAGAGTTCGAAGACAAGGTAGAAGAAGCCAAAAAATCAATCAAGgtgagttgga ... atttaagcagGCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGA
EST: ACCAGAAAGAGTTCGAAGACAAGGTAGAAGAAGCCAAAAAATCAATCAAG GCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGA
genomic: ACCAGAAAGAGTTCGAAGACAAGGTAGAAGAAGCCAAAAAATCAATCAAGgtgagttgga ... atttaagcagGCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGA
ggaattgccggaccatgtttcttacttgatggcagaagttgaacaatttaagcagGCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGAATAATGGATTTTGAAGAGGACCGCATCCGACCAAAAAG
aacaatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttagtattaaatgcttttaagtattcatatagtattaaatagtggaattgccggaccatgtttcttacttgatggcagaagttgaacaatttaagcagGCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGAATAATGGATTTTGAAGAGGACCGCATCCGACCAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - -aatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaaca