1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atacaaacatatacgaaataactgattgagccatctcctttggatcaaagaatgttcatcattgctaatgctggcgtgtctccattttactttgctacagGACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTAGCCTACAATATTGTCTCATGGATAGATGATGTTCTCATTGCAGATGGGA
species | Oryza sativa |
transcript | LOC_Os07g29780.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGGCTTGTCACAGACTACTCTGGACACAAGCAAGATTCAGTACAACAAG GACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAATTTAEST: gi|86500643|gb|CI143276.1|CI143276
genomic: CAGGCTTGTCACAGACTACCCTGGACACAAGCAAGATTCAGTACAACAAGgtaatgctta ... tttgctacagGACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTA
EST: CAGGCTTGTCACAGACTACCCTGGACACAAGCAAGATTCAGTACAACAAG GACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTAEST: gi|86601930|gb|CI258606.1|CI258606
genomic: CAGGCTTGTCACAGACTACCCTGGACACAAGCAAGATTCAGTACAACAAGgtaatgctta ... tttgctacagGACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTA
EST: CAGGCTTGTCACAGACTACCNTGGACACAAGCAAGATTCAGTACAACAAG GACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTAEST: gi|89188289|gb|CI115538.1|CI115538
genomic: CAGGCTTGTCACAGACTACCCTGGACACAAGCAAGATTCAGTACAACAAGgtaatgctta ... tttgctacagGACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTA
EST: CAGGCTTGTCACAGACTACCCTGGACACAAGCAAGATTCAGTACAACAAG GACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTAEST: gi|89194608|gb|CI117045.1|CI117045
genomic: CAGGCTTGTCACAGACTACCCTGGACACAAGCAAGATTCAGTACAACAAGgtaatgctta ... tttgctacagGACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTA
EST: CAGGCTTGTCACAGACTACCCTGGACACAAGCAAGATTCAGTACAACAAG GACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTAEST: gi|87024216|gb|CI256957.1|CI256957
genomic: CAGGCTTGTCACAGACTACCCTGGACACAAGCAAGATTCAGTACAACAAGgtaatgctta ... tttgctacagGACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTA
EST: CAGGCTTGTCACAGACTACCCTGGACACAAGCAAGATTCAGTACAACAAG GACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTAEST: gi|163927513|gb|EG713905.1|EG713905
genomic: CAGGCTTGTCACAGACTACCCTGGACACAAGCAAGATTCAGTACAACAAGgtaatgctta ... tttgctacagGACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTA
EST: CAGGCTTGTCACAGACTACCCTGGACACAAGCAAGATTCAGTACAACAAG GACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTA
genomic: CAGGCTTGTCACAGACTACCCTGGACACAAGCAAGATTCAGTACAACAAGgtaatgctta ... tttgctacagGACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTA
caaagaatgttcatcattgctaatgctggcgtgtctccattttactttgctacagGACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTAGCCTACAATATTGTCTCATGGATAGATGATGTTCTCATTGCAGATGGGA
tgctaat putative branch site (score: 2)
tctccattttacttt putative PPT
attttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacaaacatatacgaaataactgattgagccatctcctttggatcaaagaatgttcatcattgctaatgctggcgtgtctccattttactttgctacagGACATTGGGCAGGCAATACTTGAAAGCTACTCGAGGGTGCTGGAAAGTTTAGCCTACAATATTGTCTCATGGATAGATGATGTTCTCATTGCAGATGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG