Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatccctttacttccatatttccattaattgtttttcagcaatgcaccattttttgtttgaagttcatgttgttcttggatcagGATAAGGTACTCAAGCCGTTAGGCGCTATTACTACTGGGAGCCAATTCCTAGAGCCTGATG

Basic information

species Oryza sativa
transcript LOC_Os07g26610.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g26610.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G069676_T03 (Zea mays), 3'ss of exon 8
-------------------gtaatccctttacttccatatttccattaattgtttttcagcaatgcaccattttttgtttgaagttcatgttgttcttggatcagGATAAGGTACTCAAGCCGTTAGGCGCTATTACTACTGGGAGCCAATTCCTAGAGCCTGATG
                   |||        ||       |  | |  ||      |  |  || | |   |||| ||||||   ||  ||||  | |||  |||||||||||||||||| || ||||| ||| |||| ||||| || |||||||| ||||||||||
ttaaggtccaagaggaccagtacaaaaaccaccctatggtggctagcaacaagcataaataaaagaatggttttatgtttg---tttctgtt--ttttgtttcagGATAAGGTACTCAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29613465|gb|CB618478.1|CB618478
EST:     GACTGCACATAGTCGTGGATGCAGGGAATGGAGCAGGTGGCTTTTTTGTG                         GATAAGGTACTCAAGCCGTTAGGCGCTATTACTACTGGGAGCCAATTCCTA
genomic: GACTGCACATAGTCGTGGATGCAGGGAATGGAGCAGGTGGCTTTTTTGTGgtaatccctt ... cttggatcagGATAAGGTACTCAAGCCGTTAGGCGCTATTACTACTGGGAGCCAATTCCTA
EST: gi|29660678|gb|CB656953.1|CB656953
EST:     GACTGCACATAGTCGTGGATGCAGGGAATGGAGCAGGTGGCTTTTTTGTG                         GATAAGGTACTCAAGCCGTTAGGCGCTATTACTACTGGGAGCCAATTCCTA
genomic: GACTGCACATAGTCGTGGATGCAGGGAATGGAGCAGGTGGCTTTTTTGTGgtaatccctt ... cttggatcagGATAAGGTACTCAAGCCGTTAGGCGCTATTACTACTGGGAGCCAATTCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttcagcaatgcaccattttttgtttgaagttcatgttgttcttggatcagGATAAGGTACTCAAGCCGTTAGGCGCTATTACTACTGGGAGCCAATTCCTAGAGCCTGATG
                                        ttgttctt  CT-rich tract
                   attttttgtttgaa  TA-rich tract