1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttattcagttatataaatttagttgttttagctaagctagtatttttgttatgaagacatttcccatgctaaactttttcagtgttaaaaattgaatagGAGGGCATGTTCGCAGTTCATCGAACTGTGGAAGCGAAAGCATGAAACTGGACAATGGATTGAAGTTGAACCAGAAGCAATGTCTACACACTCTGAATTT
species | Oryza sativa |
transcript | LOC_Os07g26440.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGGGTTACTTGATTGCGTTTGCAGAGCGCTTTGGTGCTTCACGTTTGAT GAGGGCATGTTCGCAGTTCATCGAACTGTGGAAGCGAAAGCATGAAACTGGEST: gi|29676452|gb|CB672727.1|CB672727
genomic: CTGGGTTACTTGATTGCGTTTGCAGAGCGCTTTGGTGCTTCACGTTTGATgtaagtagtc ... aattgaatagGAGGGCATGTTCGCAGTTCATCGAACTGTGGAAGCGAAAGCATGAAACTGG
EST: CTGGGTTACTTGATTGCGTTTGCAGAGCGCTTTGGTGCTTCACGTTTGAT GAGGGCATGTTCGCAGTTCATCGAACTGTGGAAGCGAAAGCATGAAACTGG
genomic: CTGGGTTACTTGATTGCGTTTGCAGAGCGCTTTGGTGCTTCACGTTTGATgtaagtagtc ... aattgaatagGAGGGCATGTTCGCAGTTCATCGAACTGTGGAAGCGAAAGCATGAAACTGG
tttgttatgaagacatttcccatgctaaactttttcagtgttaaaaattgaatagGAGGGCATGTTCGCAGTTCATCGAACTGTGGAAGCGAAAGCATGAAACTGGACAATGGATTGAAGTTGAACCAGAAGCAATGTCTACACACTCTGAATTT
tgctaaa putative branch site (score: 2)
tgttaaaaattgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattcagttatataaatttagttgttttagctaagctagtatttttgttatgaagacatttcccatgctaaactttttcagtgttaaaaattgaatagGAGGGCATGTTCGCAGTTCATCGAACTGTGGAAGCGAAAGCATGAAACTGGACAATGGATTGAAGTTGAACCAGAAGCAATGTCTACACACTCTGAATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA