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...ttatcagttatcacagatggcatactgttggtataaaaataaacaatcttattatcacagtgctctactaacatgaaaatttacatattattttcttcagCACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATATATCTGTATTACATAATATGCGTCAGTTTGTAAAATACAGTCGGTTTAA
species | Oryza sativa |
transcript | LOC_Os07g22710.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTAT CACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATAEST: gi|29628582|gb|CB633593.1|CB633593
genomic: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTATgtatgtaact ... ttttcttcagCACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATA
EST: GTTGC-TGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTAT CACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATAEST: gi|33798127|gb|CF324924.1|CF324924
genomic: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTATgtatgtaact ... ttttcttcagCACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATA
EST: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTAT CACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATAEST: gi|58602510|gb|CK013038.1|CK013038
genomic: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTATgtatgtaact ... ttttcttcagCACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATA
EST: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTAT CACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATA
genomic: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTATgtatgtaact ... ttttcttcagCACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATA
atcttattatcacagtgctctactaacatgaaaatttacatattattttcttcagCACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATATATCTGTATTACATAATATGCGTCAGTTTGTAAAATACAGTCGGTTTAA
tactaac putative branch site (score: 0)
ttattttcttc putative PPT
tactaacatgaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatcagttatcacagatggcatactgttggtataaaaataaacaatcttattatcacagtgctctactaacatgaaaatttacatattattttcttcagCACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATATATCTGTATTACATAATATGCGTCAGTTTGTAAAATACAGTCGGTTTAA
- - - - - - - - -tggcata
- - - - - - - - - - - - ctgttgg
- - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa