1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acatgttagtattatactaatatctgcttcaacaaactaattaatcaccatttgtcttcatatggatctaagcagattgtgcctgtgttttgtgcaacagAAACAGGGTGTTGGTTTTTGTGTTGTACAAGAGAGAAGCTACGCGAGTAGAAACAATGTTACAAAGAAG
species | Oryza sativa |
transcript | LOC_Os07g20580.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTTGCTCGATAAATACCATAAAGCACAGAG AAACAGGGTGTTGGTTTTTGTGTTGTACAAGAGAGAAGCTACGCGAGTAGAEST: gi|218496130|gb|FG950088.1|FG950088
genomic: CTTTGCTCGATAAATACCATAAAGCACAGAGgtaggtattg ... tgtgcaacagAAACAGGGTGTTGGTTTTTGTGTTGTACAAGAGAGAAGCTACGCGAGTAGA
EST: AGGGATTCAAGATTAGTCGCTTTGCTCGATAAATACCATAAAGCACAGAG AAACAGGGTGTTGGTTTTTGTGTTGTACAAGAGAGAAGCTACGCGAGTAGAEST: gi|218482943|gb|FG953467.1|FG953467
genomic: AGGGATTCAAGATTAGTTGCTTTGCTCGATAAATACCATAAAGCACAGAGgtaggtattg ... tgtgcaacagAAACAGGGTGTTGGTTTTTGTGTTGTACAAGAGAGAAGCTACGCGAGTAGA
EST: AGGGATTCAAGATTAGTTGCTTTGCTCGATAAATACCATAAAGCACAGAG AAACAGGGTGTTGGTTTTTGTGTTGTACAAGAGAGAAGCTACGCGAGTAGA
genomic: AGGGATTCAAGATTAGTTGCTTTGCTCGATAAATACCATAAAGCACAGAGgtaggtattg ... tgtgcaacagAAACAGGGTGTTGGTTTTTGTGTTGTACAAGAGAGAAGCTACGCGAGTAGA
caccatttgtcttcatatggatctaagcagattgtgcctgtgttttgtgcaacagAAACAGGGTGTTGGTTTTTGTGTTGTACAAGAGAGAAGCTACGCGAGTAGAAACAATGTTACAAAGAAG
ttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgttagtattatactaatatctgcttcaacaaactaattaatcaccatttgtcttcatatggatctaagcagattgtgcctgtgttttgtgcaacagAAACAGGGTGTTGGTTTTTGTGTTGTACAAGAGAGAAGCTACGCGAGTAGAAACAATGTTACAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
acatgtt
- - - - - - - - - - - -ctgcttc
- - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcctg