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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagagccaattttccttttgccatgtccctgagctaacaacaaattctgccttttatttttgtactgtacgctattatatttatacatcatcattgtagGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACTACGATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGG

Basic information

species Oryza sativa
transcript LOC_Os07g19560.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88272875|gb|CI386135.1|CI386135
EST:     CTGGATGGGAGGTCGAGCAACGTG                         GCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACC
genomic: CTGGATGGGAGGTCGAGCAACGTGgtattatcac ... atcattgtagGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACC
EST: gi|86427443|gb|CI072540.1|CI072540
EST:     ACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTG                         GCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACC
genomic: ACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGgtattatcac ... atcattgtagGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACC
EST: gi|29637898|gb|CB642907.1|CB642907
EST:     CCCAACTCTTCCTGGGTTTGGACGTGCTGGATGGGAGGTCGAGCAACGTG                         GCTCCCCTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACC
genomic: ACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGgtattatcac ... atcattgtagGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACC
EST: gi|88845545|gb|CI084470.1|CI084470
EST:     CCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTG                         GCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACC
genomic: CCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGgtattatcac ... atcattgtagGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgccttttatttttgtactgtacgctattatatttatacatcatcattgtagGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACTACGATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGG
                            tattatatttatacat  TA-rich tract