1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatttcttttgtactatgtatattgtgctttatccactagaacgacaaatccaaattttatattaacaaaagcacactggggattgtcttagcagTGGTTGATGGAGACATCATTGACTTAAATCTGAGAATTTCACAGCCTAACGTTCATGAGCTGAAAAGTGATGGTACCCTAACTGGGTTCCAGTTGAATTG
species | Oryza sativa |
transcript | LOC_Os07g13170.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGATCCTAGTTCTTATGATGGAGATGTTCTACCTGAAACCGACAATGAAG TGGTTGATGGAGACATCATTGACTTAAATCTGAGAATTTCACAGCCTAACGEST: gi|29677592|gb|CB673867.1|CB673867
genomic: TGATCCTAGTTCTTATGATGGAGATGTTCTACCTGAAACCGACAATGAAGgtatttcttt ... gtcttagcagTGGTTGATGGAGACATCATTGACTTAAATCTGAGAATTTCACAGCCTAACG
EST: TGATCCTAGTTCTTATGATGGAGATGTTCTACCTGAAACCGACAATGAAG TGGTTGATGGAGACATCATTGACTTAAATCTGAGAATTTCACAGCCTAACGEST: gi|88224266|gb|CI224115.1|CI224115
genomic: TGATCCTAGTTCTTATGATGGAGATGTTCTACCTGAAACCGACAATGAAGgtatttcttt ... gtcttagcagTGGTTGATGGAGACATCATTGACTTAAATCTGAGAATTTCACAGCCTAACG
EST: TGATCCTAGTTCTTATGATGGAGATGTTCTACCTGAAACCGACAATGAAG TGGTTGATGGAGACATCATTGACTTAAATCTGAGAATTTCACAGCCTAACGEST: gi|157651263|gb|EX450897.1|EX450897
genomic: TGATCCTAGTTCTTATGATGGAGATGTTCTACCTGAAACCGACAATGAAGgtatttcttt ... gtcttagcagTGGTTGATGGAGACATCATTGACTTAAATCTGAGAATTTCACAGCCTAACG
EST: TGATCCTAGTTCTTATGATGGAGATGTTCTACCTGAAACCGACAATGAAG TGGTTGATGGAGACATCATTGACTTAAATCTGAGAATEST: gi|58587235|gb|CF985543.1|CF985543
genomic: TGATCCTAGTTCTTATGATGGAGATGTTCTACCTGAAACCGACAATGAAGgtatttcttt ... gtcttagcagTGGTTGATGGAGACATCATTGACTTAAATCTGAGAAT
EST: TGATCCTAGTTCTTATGATGGAGATGTTCTACCTGAAACCGGCAATGAAG TGGTTGATGGAGACATCATTGACTTAAATCTGAGAATTTCACAGCCTAACG
genomic: TGATCCTAGTTCTTATGATGGAGATGTTCTACCTGAAACCGACAATGAAGgtatttcttt ... gtcttagcagTGGTTGATGGAGACATCATTGACTTAAATCTGAGAATTTCACAGCCTAACG
aacgacaaatccaaattttatattaacaaaagcacactggggattgtcttagcagTGGTTGATGGAGACATCATTGACTTAAATCTGAGAATTTCACAGCCTAACGTTCATGAGCTGAAAAGTGATGGTACCCTAACTGGGTTCCAGTTGAATTG
tattaac putative branch site (score: 1)
ttgtctt putative PPT
aaatccaaattttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcttttgtactatgtatattgtgctttatccactagaacgacaaatccaaattttatattaacaaaagcacactggggattgtcttagcagTGGTTGATGGAGACATCATTGACTTAAATCTGAGAATTTCACAGCCTAACGTTCATGAGCTGAAAAGTGATGGTACCCTAACTGGGTTCCAGTTGAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA