1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctatgattcaattcttagtcactatgaacacctgctaggactagtgcaatgcccctaaagtggtgacttgtgagtaatgcccctttaccctctgatgtagGTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGGGTGTTTACAGTAACTGGTAGTCGTCCTGATGAAGAG
species | Oryza sativa |
transcript | LOC_Os07g07000.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTGCAG GTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGGEST: gi|58596499|gb|CK007027.1|CK007027
genomic: AGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAGgtactgagtt ... tctgatgtagGTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGG
EST: AGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAG GTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGGEST: gi|58656531|gb|CK045211.1|CK045211
genomic: AGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAGgtactgagtt ... tctgatgtagGTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGG
EST: AGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAG GTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGGEST: gi|58679994|gb|CK068681.1|CK068681
genomic: AGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAGgtactgagtt ... tctgatgtagGTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGG
EST: AGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAG GTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGG
genomic: AGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAGgtactgagtt ... tctgatgtagGTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGG
gcaatgcccctaaagtggtgacttgtgagtaatgcccctttaccctctgatgtagGTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGGGTGTTTACAGTAACTGGTAGTCGTCCTGATGAAGAG
tgcccctttaccctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatgattcaattcttagtcactatgaacacctgctaggactagtgcaatgcccctaaagtggtgacttgtgagtaatgcccctttaccctctgatgtagGTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGGGTGTTTACAGTAACTGGTAGTCGTCCTGATGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- -tgattca
- - - - - - - - - - - -atgaaca
- - - - - - - - - - - - - - - cctgcta
- - - - - - - - - - - - - - - - - - - - ctagtgc
- - - - - - - - - - - - - - - - - - - - - - - -aatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacttg