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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttttagttcaactgcatatcttattgacattgctttctgctatttgcaatttactttcgtatgtggataagaaagcatgttgagaatatatacatagtatagagcactttagctgtatacaaaagatacagaatctggcctggactgcaagtgcaattttcttttctctatgcagGCAAATGTCTATCATGCATCAAAGGCTGATGGCCAGGAGTTAGCGATCAAAGTCTATAAAACATCTGTCCTTGTTTTTAA

Basic information

species Oryza sativa
transcript LOC_Os07g06820.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g06820.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G120329_T01 (Zea mays), 3'ss of exon 3
gtatttttttagttcaactgcatatcttattgacattgctttctgctatttgcaatttactttcgtatgtggataagaaagcatgttgagaatatatacatagtatagagcactttagctgtatacaaaagatacagaatctggcctggactgcaagtgcaattttcttttctctatgcagGCAAATGTCTATCATGCATCAAAGGCTGATGGCCAGGAGTTAGCGATCAAAGTCTATAAAACATCTGTCCTTGTTTTTAA
                                                                 |  ||   | |||  ||   ||||       | | |||| |||||  |||||  |   ||        |   | | |      ||          | |  || | ||| |  |||||||||||||||||||||| ||||| | |||||||||||| | || || |||||||| ||||| |||||||||||||||||
-----------------------------------------------------------------tgagtctttgagat-gctccttga-----cctgc-tagt-tagagatctttattttccta--------attaagtataattatgaacatggtcaaattaatcctatctatgggcagGCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTCCTTGTTTTTAA

upper sequence: LOC_Os07g06820.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G035098_T01 (Zea mays), 3'ss of exon 5
gtatttttttagttcaactgcatatcttattgacattgctttctgctatttgcaatttactttcgtatgtggataagaaagcatgttgagaatatatacatagtatagagcactttagctgtatacaaaagatacagaatctggcctggactgcaagtgcaattttcttttctctatgcagGCAAATGTCTATCATGCATCAAAGGCTGATGGCCAGGAGTTAGCGATCAAAGTCTATAAAACATCTGTCCTTGTTTTTAA
                                                                  |    | |    | ||   ||||       | | |||| |||||  |||||  |   ||        |   | | |      ||     |    | |  |||| ||| |  |||||||||||||||||||||| ||||| | |||||||||||| | || || |||||||| ||||| ||||| |||||||||||
------------------------------------------------------------------actgagtttgagatgctccttga-----cctgc-tagt-tagagatctttattttccta--------attaagtataattatgaacatgatcaaattaatcttatctatgggcagGCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTTCTTGTTTTTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagatacagaatctggcctggactgcaagtgcaattttcttttctctatgcagGCAAATGTCTATCATGCATCAAAGGCTGATGGCCAGGAGTTAGCGATCAAAGTCTATAAAACATCTGTCCTTGTTTTTAA
                                    ttttcttttctctatg  CT-rich tract
                                  aattttctttt  TA-rich tract