1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatatgaattacaattatatgtgatgcaatgcaagacctctagttttaatatgaattaaaattttgacatttttttttcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG
species | Oryza sativa |
transcript | LOC_Os07g02350.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|89194544|gb|CI116981.1|CI116981
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|29616864|gb|CB621876.1|CB621876
genomic: AGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|89194075|gb|CI116512.1|CI116512
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: CCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|94362908|gb|CI053069.1|CI053069
genomic: CCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|89174479|gb|CI110677.1|CI110677
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|88957426|gb|CI095367.1|CI095367
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: TGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|58679114|gb|CK067801.1|CK067801
genomic: TGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCGACATCTEST: gi|89182336|gb|CI113705.1|CI113705
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: TTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|86491402|gb|CI134035.1|CI134035
genomic: TTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: CTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|58598121|gb|CK008649.1|CK008649
genomic: CTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|29657466|gb|CB653741.1|CB653741
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|2796293|gb|AA749587.1|AA749587
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTGGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|88993477|gb|CI110298.1|CI110298
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|86419015|gb|CI053816.1|CI053816
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|29662231|gb|CB658506.1|CB658506
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|27577759|gb|CB000454.1|CB000454
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|86418789|gb|CI053590.1|CI053590
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|89180390|gb|CI044669.1|CI044669
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|86259780|gb|CI065653.1|CI065653
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|86425532|gb|CI070629.1|CI070629
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|89169654|gb|CI110013.1|CI110013
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: GCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|29663347|gb|CB659622.1|CB659622
genomic: GCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|29661178|gb|CB657453.1|CB657453
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|29619982|gb|CB624994.1|CB624994
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|86490821|gb|CI133454.1|CI133454
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTEST: gi|86524746|gb|CI164952.1|CI164952
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
EST: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAG GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
genomic: AACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTGGAAGgtatatgaat ... tcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCT
aagacctctagttttaatatgaattaaaattttgacatttttttttcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG
ttttgac putative branch site (score: 23)
catttttttttcat CT-rich tract
ttttaatatgaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgaattacaattatatgtgatgcaatgcaagacctctagttttaatatgaattaaaattttgacatttttttttcatatgcagGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG