1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgtataaataccatggtagctttgtatgcactagagtttttgttcaatttaaatgcgtgtcctttctaatctggcatcaattttgtgaactgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGACTGGCATTACCAGCAGCTACACGAAACTTTGCGGTGGATGGCTTTGTA
species | Oryza sativa |
transcript | LOC_Os07g01930.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGEST: gi|88261690|gb|CI365266.1|CI365266
genomic: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
EST: ACAGATGAAGAAAATGATATGCTTGACCTGGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTTTCAAGTGATAGCAAAGCCAGAACTTGATGGGCATGCEST: gi|88459335|gb|CI517013.1|CI517013
genomic: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGAT-GGCATGC
EST: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGEST: gi|88288335|gb|CI515479.1|CI515479
genomic: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
EST: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGEST: gi|10794608|gb|AU108574.1|AU108574
genomic: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
EST: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGEST: gi|218490073|gb|FG948574.1|FG948574
genomic: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
EST: ACAGATGAA-AAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGEST: gi|88459059|gb|CI514340.1|CI514340
genomic: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
EST: ATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGEST: gi|88459235|gb|CI516913.1|CI516913
genomic: ATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
EST: CAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGEST: gi|88545049|gb|CI474579.1|CI474579
genomic: CAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
EST: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCTTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGEST: gi|33680136|gb|CF308375.1|CF308375
genomic: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
EST: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGEST: gi|24468825|gb|CA305774.1|CA305774
genomic: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
EST: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGEST: gi|88304282|gb|CI515555.1|CI515555
genomic: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
EST: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGEST: gi|33680135|gb|CF308374.1|CF308374
genomic: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
EST: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTGTCAAGTGATEST: gi|88468585|gb|CI515067.1|CI515067
genomic: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGAT
EST: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGEST: gi|11443010|gb|BF430897.1|BF430897
genomic: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
EST: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAAC GTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
genomic: ACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACgtaagtgaag ... ctgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCG
caatttaaatgcgtgtcctttctaatctggcatcaattttgtgaactgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGACTGGCATTACCAGCAGCTACACGAAACTTTGCGGTGGATGGCTTTGTA
ttctaat putative branch site (score: 10)
atcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtataaataccatggtagctttgtatgcactagagtttttgttcaatttaaatgcgtgtcctttctaatctggcatcaattttgtgaactgtattcagGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGACTGGCATTACCAGCAGCTACACGAAACTTTGCGGTGGATGGCTTTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - -taccatg
- - - - - - - - - - - -tgtatgc
- - - - - - - - - - - - - - - - - - gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcatc