1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtgcgttaaaagtccttgttataaatttgctgatgccagcaaattgtggtgcaactcaaccatatatttgtttattactgaaatctgagtactgtcacagGCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAGTTTAAACTGCTCGAACCTAGAGATGGGTTTGTATCACTTGACAACTTTC
species | Oryza sativa |
transcript | LOC_Os06g50030.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAATTAAGCAATACCTCCGCGCTACACCTCTTAAACGGTTGGCATTAAAG GCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAGEST: gi|58670971|gb|CK059657.1|CK059657
genomic: TAATTAAGCAATACCTCCGCGCTACACCTCTTAAACGGTTGGCATTAAAGgttcgttata ... actgtcacagGCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAG
EST: TAATTAAGCAATACCTCCGCGCTACACCTCTTAAACGGTTGGCATTAAAG GCACTATCCAANGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAGEST: gi|218501862|gb|FG958631.1|FG958631
genomic: TAATTAAGCAATACCTCCGCGCTACACCTCTTAAACGGTTGGCATTAAAGgttcgttata ... actgtcacagGCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAG
EST: TAATTAAGCAATACCTCCGCGCTACACCTCTTAAACGGTTGGCATTAAAG GCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAGEST: gi|33676550|gb|CF304789.1|CF304789
genomic: TAATTAAGCAATACCTCCGCGCTACACCTCTTAAACGGTTGGCATTAAAGgttcgttata ... actgtcacagGCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAG
EST: TAATTAAGCAATACCTCCGCGCTACACCTCTTAAACGGTTGGCATTAAAG GCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAG
genomic: TAATTAAGCAATACCTCCGCGCTACACCTCTTAAACGGTTGGCATTAAAGgttcgttata ... actgtcacagGCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAG
gtggtgcaactcaaccatatatttgtttattactgaaatctgagtactgtcacagGCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAGTTTAAACTGCTCGAACCTAGAGATGGGTTTGTATCACTTGACAACTTTC
atatatttgtttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgttaaaagtccttgttataaatttgctgatgccagcaaattgtggtgcaactcaaccatatatttgtttattactgaaatctgagtactgtcacagGCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAGTTTAAACTGCTCGAACCTAGAGATGGGTTTGTATCACTTGACAACTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - -gtccttg
- - - - - - - - - - - - - - - tgatgcc
- - - - - - - - - - - - - - - - - - -agcaaat
- - - - - - - - - - - - - - - - - - - - - - -gtggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttactga