Sequence
atgc intronic sequence ATGC exonic sequence...aatgcacatatggaacaaaaaggaattatatttttttttggaaaatgtatctccatataatcttttggcatccctaaaaaggatattatcatgtttccagCTTGGTGAAGAGCTTTTGTTCACGATAGGCGGGCAACATATTCCTTTCGGTGCATCACCGCAG
Basic information
species | Oryza sativa |
transcript | LOC_Os06g49990.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os06g49990.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G116434_T01 (Zea mays), 3'ss of exon 7
aatgcacatatggaacaaaaaggaattatatttttttttggaaaatgt-atctccatataatcttttggcatccctaaaaaggatattat-catgtttccagCTTGGTGAAGAGCTTTTGTTCACGATAGGCGGGCAACATATTCCTTTCGGTGCATCACCGCAG
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--cgtgtatatgaattagttgtgatttctgtatgttatttagtcttacgattcttaccaagtcttaccagtggattaaacattttcttatacttgttttcagCTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGTGCATCACCACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11442702|gb|BF430605.1|BF430605EST: TTCCTGCATTACCTGCAGGCAGCCTGTACATGGAGGAAGTGCATGCAAAG CTTGGTGAAGAGCTTTTGTTCACGATAGGCGGGCAACATATTCCTTTCGGT
genomic: TTCCTGCATTACCTGCAGGCAGCCTGTACATGGAGGAAGTGCATGCAAAGgtatatcacc ... atgtttccagCTTGGTGAAGAGCTTTTGTTCACGATAGGCGGGCAACATATTCCTTTCGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtatctccatataatcttttggcatccctaaaaaggatattatcatgtttccagCTTGGTGAAGAGCTTTTGTTCACGATAGGCGGGCAACATATTCCTTTCGGTGCATCACCGCAG
ccctaaa putative branch site (score: 3)
tgtttcc putative PPT
taaaaaggatattat TA-rich tract