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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggaaagctctgtcaagtctgggcctttgtatatgaaaaatgtgtgctcagcaacatcttgacatcctgtttataacatgatattgttatatatttgcagCAACACTCGGACAGATTTTATCGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTATCTGACAA

Basic information

species Oryza sativa
transcript LOC_Os06g46570.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g46570.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G007185_T01 (Zea mays), 3'ss of exon 7
-gggaaagctctgtcaagtctgggcct----ttgtatatgaaaaatgtgtgctcagcaacatcttgacatcctgtttataacatgatattgttatatatttgcagCAACACTCGGACAGATTTTATCGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTATCTGACAA
  |   |  | |  ||  | ||  |||    || |||     || ||| |  | |    || |   ||||  | ||| |||||||| |   || ||  |||||||||||||| ||| | || ||||| || ||| ||   |||||||| ||||| ||||||||||||||||| || || ||| | ||||||||
gtgttgatttttagcatat-tgaacctgacattatattcagtaattgtctttttatgttcagc--aacattatatttctaacatgaca--attttacgtttgcagCAACACTTGGAAATATCTTATCCAAACATATTTCAAAGCCCAGGGTATACATTGGATGCATGAAGTCTGGCCCTGTCCTCTCTGACAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcagcaacatcttgacatcctgtttataacatgatattgttatatatttgcagCAACACTCGGACAGATTTTATCGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTATCTGACAA
                         ttataac  putative branch site (score: 2)
                      tgtttataacatgata  TA-rich tract