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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcaagatgaacgcatagtctgtcaccttggacatcctaccattatatatcatgtttctagatcatctaacacccttttatatctccaattgtacacagTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGG

Basic information

species Oryza sativa
transcript LOC_Os06g45850.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14981799|gb|BI306477.1|BI306477
EST:     GGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACA-GG----                         TTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATT
genomic: GGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGGTAATgttagctgtt ... ttgtacacagTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATT
EST: gi|14980943|gb|BI305621.1|BI305621
EST:     GGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACA-GG----                         TTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATT
genomic: GGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGGTAATgttagctgtt ... ttgtacacagTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATT
EST: gi|14981862|gb|BI306540.1|BI306540
EST:     GGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACA-GG----                         TTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATT
genomic: GGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGGTAATgttagctgtt ... ttgtacacagTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATT
EST: gi|86537757|gb|CI177963.1|CI177963
EST:     CATCTGACTTTACAAGCAGCTGCAGACA-GG----                         TTTGGTGCCAATATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAANT
genomic: CATCTGACTTTACAAGCAGCTGCAGACAGGGTAATgttagctgtt ... ttgtacacagTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatcatgtttctagatcatctaacacccttttatatctccaattgtacacagTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGG
                    atctaac  putative branch site (score: 2)
                               ttttatatct  TA-rich tract