1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgtcaataagggcatattttatgttctacacaacacttgcatttgacttcgatttgttatagtgcaatgtcctgacattttgactctacctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT
species | Oryza sativa |
transcript | LOC_Os06g45840.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAEST: gi|218500576|gb|FG960552.1|FG960552
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: TGATGAGATATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAEST: gi|218481447|gb|FG951027.1|FG951027
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACC-AATTAAGTCTGAAEST: gi|38474825|gb|CF958958.1|CF958958
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAEST: gi|88688887|gb|CI732463.1|CI732463
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAEST: gi|27545921|gb|CA764047.2|CA764047
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAEST: gi|218489538|gb|FG952484.1|FG952484
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAEST: gi|29637643|gb|CB642652.1|CB642652
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAEST: gi|218494859|gb|FG953214.1|FG953214
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAEST: gi|89177323|gb|CI250772.1|CI250772
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: GATGAGAAATCTGTCCATGAACTGT-ACTAGCCCCAACTTTGCGGCACAT CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAEST: gi|88689244|gb|CI732820.1|CI732820
genomic: GATGAGAAATCTGTCCATGAACT-TAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAEST: gi|88689640|gb|CI733216.1|CI733216
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAEST: gi|88691348|gb|CI733931.1|CI733931
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAEST: gi|27334389|gb|CA882840.1|CA882840
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAGCTTTGCGGCACAT CTGAGCTTGCTGTCAGCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
gacttcgatttgttatagtgcaatgtcctgacattttgactctacctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT
ctctacct CT-rich tract
atttgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtcaataagggcatattttatgttctacacaacacttgcatttgacttcgatttgttatagtgcaatgtcctgacattttgactctacctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA