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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggagctcaaagtcctaccgcattccgcattttagttgtttcagcacttcatttgagcatcaatacgtttcttttacataatcttcttttgggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAATTTATCATTGCGAAGAGTTCTTGGAACCATTTCTGATGCCTGCTGTTCCT

Basic information

species Oryza sativa
transcript LOC_Os06g43570.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88548233|gb|CI476587.1|CI476587
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88488763|gb|CI426034.1|CI426034
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|3767196|gb|AU031306.1|AU031306
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88418328|gb|CI548609.1|CI548609
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|86866304|gb|CI336928.1|CI336928
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|86869859|gb|CI316587.1|CI316587
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|27578275|gb|CB000970.1|CB000970
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|86887201|gb|CI326016.1|CI326016
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88428109|gb|CI557003.1|CI557003
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88507635|gb|CI435141.1|CI435141
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|33658927|gb|CF281540.1|CF281540
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|33663267|gb|CF294234.1|CF294234
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88270346|gb|CI385604.1|CI385604
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|55432675|gb|CV729358.1|CV729358
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88519731|gb|CI447385.1|CI447385
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|218483130|gb|FG953131.1|FG953131
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTG
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTG
EST: gi|88535745|gb|CI465448.1|CI465448
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|33660210|gb|CF291177.1|CF291177
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|55413998|gb|CV726374.1|CV726374
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGCAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88553613|gb|CI483736.1|CI483736
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88462423|gb|CI514555.1|CI514555
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|55413602|gb|CV725978.1|CV725978
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|33684761|gb|CF313000.1|CF313000
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88510953|gb|CI438459.1|CI438459
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88439058|gb|CI551909.1|CI551909
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88303909|gb|CI512983.1|CI512983
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88960027|gb|CI381905.1|CI381905
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88503638|gb|CI431144.1|CI431144
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88380069|gb|CI513659.1|CI513659
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGGCAGGATGGACTAAA
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGG-CAGGATGGACTAAA
EST: gi|88504347|gb|CI431853.1|CI431853
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|33660368|gb|CF291335.1|CF291335
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|29666365|gb|CB662640.1|CB662640
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88486810|gb|CI424081.1|CI424081
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|38478459|gb|CF962592.1|CF962592
EST:     TCAGTTGATCGTGA-TGCCTCAGGGGTGGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|25806911|gb|CA762872.1|CA762872
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|58683923|gb|CK072610.1|CK072610
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|86420774|gb|CI056763.1|CI056763
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88548646|gb|CI476461.1|CI476461
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88446137|gb|CI552643.1|CI552643
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|55412563|gb|CV724939.1|CV724939
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88835147|gb|CI370450.1|CI370450
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88381068|gb|CI523639.1|CI523639
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|33660483|gb|CF291450.1|CF291450
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88289950|gb|CI547587.1|CI547587
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88295297|gb|CI525450.1|CI525450
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|88451370|gb|CI536763.1|CI536763
EST:     GTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: GTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
EST: gi|33681923|gb|CF310162.1|CF310162
EST:     TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT                         GACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT
genomic: TCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGTgtaagttcac ... gggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcatttgagcatcaatacgtttcttttacataatcttcttttgggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAATTTATCATTGCGAAGAGTTCTTGGAACCATTTCTGATGCCTGCTGTTCCT
                                    tcttcttttg  CT-rich tract
                      tttcttttacataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tggagctcaaagtcctaccgcattccgcattttagttgtttcagcacttcatttgagcatcaatacgtttcttttacataatcttcttttgggttttcagGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAATTTATCATTGCGAAGAGTTCTTGGAACCATTTCTGATGCCTGCTGTTCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
tggagct
- - - - - - - - - -gcattcc
- - - - - - - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - -gcacttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - gagcatc