1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gatggttgtcactgattcctttaatatgatgtggaaaactgtatgtgactcctggtattgcatggattgtgtgtaacagaattttcctacttttatacagGTAAAAATGATCATGGCGACTAATCGTCCTGATGTTTTGGACCCTGCACTCCTTCGTCCTGGGCGGTTGGACAGGAAGATTGAAATTCCACTGCCAAATG
species | Oryza sativa |
transcript | LOC_Os06g40560.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
tgactcctggtattgcatggattgtgtgtaacagaattttcctacttttatacagGTAAAAATGATCATGGCGACTAATCGTCCTGATGTTTTGGACCCTGCACTCCTTCGTCCTGGGCGGTTGGACAGGAAGATTGAAATTCCACTGCCAAATG
gtgtaac putative branch site (score: 22)
ttttcctacttttat putative PPT
tacttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatggttgtcactgattcctttaatatgatgtggaaaactgtatgtgactcctggtattgcatggattgtgtgtaacagaattttcctacttttatacagGTAAAAATGATCATGGCGACTAATCGTCCTGATGTTTTGGACCCTGCACTCCTTCGTCCTGGGCGGTTGGACAGGAAGATTGAAATTCCACTGCCAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
-atggttg
- - - - - -ctgattc
- - - - - - - - - - - - -atgatgt
- - - - - - - - - - - - - - - - - - - ctgtatg
- - - - - - - - - - - - - - - - - - - - - - - - ctcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgg