1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcgatcgcagaggatctgaccatgatatgtcatatcaattcaaaatgtttattatctaagaaactactatagtggtaagagagattaattttgggtgcagGACGGTGGAGGAGGCGATCGAGAGGGCGAACGGGACGAGGTACGGGCTGGCGGCGGGGCTGGTGACGAGGGACATCGACGTGGCGAACCGGATGGCGAGG
species | Oryza sativa |
transcript | LOC_Os06g39230.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCGCGAGGGAGGAGATCTTCGGCCCCGTCATGTGCCTGATGAAGTTCAA GACGGTGGAGGAGGCGATCGAGAGGGCGAACGGGACGAGGTACGGGCTGGCEST: gi|58685886|gb|CK074573.1|CK074573
genomic: ATCGCGAGGGAGGAGATCTTCGGCCCCGTCATGTGCCTGATGAAGTTCAAgtaaacccag ... ttgggtgcagGACGGTGGAGGAGGCGATCGAGAGGGCGAACGGGACGAGGTACGGGCTGGC
EST: ATCGCGAGGGAGGAGATCTTCGGCCCCGTCATGTGCCTGATGAAGTTCAA GACGGTGGAGGAGGCGATCGAGAGGGCGAACGGGACGAGGTACGGGCTGGCEST: gi|112786568|gb|EE591012.1|EE591012
genomic: ATCGCGAGGGAGGAGATCTTCGGCCCCGTCATGTGCCTGATGAAGTTCAAgtaaacccag ... ttgggtgcagGACGGTGGAGGAGGCGATCGAGAGGGCGAACGGGACGAGGTACGGGCTGGC
EST: ATCGCGAGGGAGGAGATCTTCGGCCCCGTCATGTGCCTGATGAAGTTCAA GACGGTGGAGGAGGCGATCGAGAGGGCGAACGGGACGAGGTACGGGCTGGC
genomic: ATCGCGAGGGAGGAGATCTTCGGCCCCGTCATGTGCCTGATGAAGTTCAAgtaaacccag ... ttgggtgcagGACGGTGGAGGAGGCGATCGAGAGGGCGAACGGGACGAGGTACGGGCTGGC
tgtttattatctaagaaactactatagtggtaagagagattaattttgggtgcagGACGGTGGAGGAGGCGATCGAGAGGGCGAACGGGACGAGGTACGGGCTGGCGGCGGGGCTGGTGACGAGGGACATCGACGTGGCGAACCGGATGGCGAGG
gattaat putative branch site (score: 20)
agattaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgatcgcagaggatctgaccatgatatgtcatatcaattcaaaatgtttattatctaagaaactactatagtggtaagagagattaattttgggtgcagGACGGTGGAGGAGGCGATCGAGAGGGCGAACGGGACGAGGTACGGGCTGGCGGCGGGGCTGGTGACGAGGGACATCGACGTGGCGAACCGGATGGCGAGG
- - - - - - - - - - catgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaga