1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtagcaagcaggattcgtttactccatatgctctttgctgggatgtcctttgaacattttcttgctgtaattttccaacactcagGGAGTGCAGGGATGCTCTGCTGTACCCGAATCAGACATTGTGCAGGCGTCTAGAAGT
species | Oryza sativa |
transcript | LOC_Os06g36740.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGATGTGCAACATGGTAAAAGACTGTTTGCTACAACGATACTTCAGCAAG GGAGTGCAGGGATGCTCTGCTGTACCCGAATCAGACATTGTGCAGGCGTCTEST: gi|87004289|gb|CI296831.1|CI296831
genomic: GGATGTGCAACATGGTAAAAGACTGTTTGCTACAACGATACTTCAGCAAGgtagcaagca ... caacactcagGGAGTGCAGGGATGCTCTGCTGTACCCGAATCAGACATTGTGCAGGCGTCT
EST: GGATGTGCAACATGGTAAAAGACTGTTTGCTACAACGATACTTCAGCAAG GGAGTGCAGGGATGCTCTGCTGTACCCGAATCAGACATTGTGCAGGCGTCTEST: gi|86256344|gb|CI012634.1|CI012634
genomic: GGATGTGCAACATGGTAAAAGACTGTTTGCTACAACGATACTTCAGCAAGgtagcaagca ... caacactcagGGAGTGCAGGGATGCTCTGCTGTACCCGAATCAGACATTGTGCAGGCGTCT
EST: GGATGTGCAACATGGTAAAAGACTGTTTGCTACAACGATACTTCAGCAAG GGAGTGCAGGGATGCTCTGCTGTACCCGAATCAGACATTGTGCAGGCGTCT
genomic: GGATGTGCAACATGGTAAAAGACTGTTTGCTACAACGATACTTCAGCAAGgtagcaagca ... caacactcagGGAGTGCAGGGATGCTCTGCTGTACCCGAATCAGACATTGTGCAGGCGTCT
ctctttgctgggatgtcctttgaacattttcttgctgtaattttccaacactcagGGAGTGCAGGGATGCTCTGCTGTACCCGAATCAGACATTGTGCAGGCGTCTAGAAGT
ttttcc CT-rich tract
tgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcaagcaggattcgtttactccatatgctctttgctgggatgtcctttgaacattttcttgctgtaattttccaacactcagGGAGTGCAGGGATGCTCTGCTGTACCCGAATCAGACATTGTGCAGGCGTCTAGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT