1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaaacacacggttcatcgtgtcgattcatcaccaattgcataccatggagcagagaaatcttcagttctagtactgaggttgtagttttctctgaaatgttgatgtgtttcttgttcttgttcatctcagGTTGCCAAGGAGAACAAGACCACTCTTCCTTCTGCAGGCTTGTTCATCATCAGATATCATTCATTCTACC
species | Oryza sativa |
transcript | LOC_Os06g36560.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGACAATGTTCTCATGTCCTGGGGCCATGACGACTACATGTACCTG GTTGCCAAGGAGAACAAGACCACTCTTCCTTCTGCAGGCTTGTTCATCATCEST: gi|38471901|gb|CF956032.1|CF956032
genomic: GCCTTGACAATGTTCTCATGTCCTGGGGCCATGACGACTACATGTACCTGgtaaaacaca ... ttcatctcagGTTGCCAAGGAGAACAAGACCACTCTTCCTTCTGCAGGCTTGTTCATCATC
EST: GCCTTGACAATGTACTCATGTCCTGGGGCCATGACGACTACATGTACCTG GTTGCCAAGGAGAACAAGACCACTCTTCCTTCTGCAGGCTTGTTCATCATCEST: gi|66920340|gb|CX107188.1|CX107188
genomic: GCCTTGACAATGTTCTCATGTCCTGGGGCCATGACGACTACATGTACCTGgtaaaacaca ... ttcatctcagGTTGCCAAGGAGAACAAGACCACTCTTCCTTCTGCAGGCTTGTTCATCATC
EST: GCCTTGACAATGTTCTCATGTCCTGGGGCCATGACGACTACATGTACCTG GTTGCCAAGGAGAACAAGATCACTCTTCC
genomic: GCCTTGACAATGTTCTCATGTCCTGGGGCCATGACGACTACATGTACCTGgtaaaacaca ... ttcatctcagGTTGCCAAGGAGAACAAGACCACTCTTCC
gaggttgtagttttctctgaaatgttgatgtgtttcttgttcttgttcatctcagGTTGCCAAGGAGAACAAGACCACTCTTCCTTCTGCAGGCTTGTTCATCATCAGATATCATTCATTCTACC
tgttgat putative branch site (score: 199)
tttcttgttcttgttc putative PPT
tagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacacacggttcatcgtgtcgattcatcaccaattgcataccatggagcagagaaatcttcagttctagtactgaggttgtagttttctctgaaatgttgatgtgtttcttgttcttgttcatctcagGTTGCCAAGGAGAACAAGACCACTCTTCCTTCTGCAGGCTTGTTCATCATCAGATATCATTCATTCTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG