1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtactcttatattttgtttttatcatttcttaacttgttcagttgtggtagtagcatcttgaattatactaaatgcatcctttcttttgcaattttatcagCCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAG
species | Oryza sativa |
transcript | LOC_Os06g35530.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGATATATGGTCTGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGTCAA CCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAGEST: gi|29672897|gb|CB669172.1|CB669172
genomic: TTGATATATGGTCTGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGTCAAgtaagtactc ... attttatcagCCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAG
EST: TGATATATGGTCTGCTGGATGTG-TCTTTGCTGAGCTGCTTCTTGGTCAA CCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAGEST: gi|33801683|gb|CF326713.1|CF326713
genomic: TGATATATGGTCTGCTGGATGTGTTC-TTGCTGAGCTGCTTCTTGGTCAAgtaagtactc ... attttatcagCCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAG
EST: GCTGCTTCTTGGTCAA CCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAGEST: gi|38473115|gb|CF957247.1|CF957247
genomic: GCTGCTTCTTGGTCAAgtaagtactc ... attttatcagCCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAG
EST: TTGATATATGGTCTGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGTCAA CCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAGEST: gi|15008260|gb|AU222648.1|AU222648
genomic: TTGATATATGGTCTGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGTCAAgtaagtactc ... attttatcagCCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAG
EST: TTGATATATGGTCTGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGTCAA CCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAGEST: gi|58680026|gb|CK068713.1|CK068713
genomic: TTGATATATGGTCTGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGTCAAgtaagtactc ... attttatcagCCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAG
EST: TTGATATATGGTCTGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGTCAA CCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAG
genomic: TTGATATATGGTCTGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGTCAAgtaagtactc ... attttatcagCCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAG
ggtagtagcatcttgaattatactaaatgcatcctttcttttgcaattttatcagCCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAG
tactaaa putative branch site (score: 46)
ttttatc putative PPT
ttgaattatactaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtactcttatattttgtttttatcatttcttaacttgttcagttgtggtagtagcatcttgaattatactaaatgcatcctttcttttgcaattttatcagCCTCTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTTGAGATAATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA