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...atataaaatccttgagtgtcaacttctgcagatggttaatttaacattattttgtctatttctgacacaatactaataagtatttgttatgttcatgtagTTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAG
species | Oryza sativa |
transcript | LOC_Os06g13810.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGCACGCTCAACCGGGAANTACTACCACT TTATGAGGCTTATGGGACNTGCTGCTTCTCACATTACATTGGAGTGTGCTCEST: gi|29689204|gb|CB685479.1|CB685479
genomic: ATGCACGCTCAACCGGGAAGTACTACCACTgtaagtttct ... gttcatgtagTTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTC
EST: GATTGGTAATGTTATGACTGATGCACGCTCAACCGGGAAGTACTACCACT TTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTCEST: gi|157650204|gb|EX449838.1|EX449838
genomic: GATTGGTAATGTTATGACTGATGCACGCTCAACCGGGAAGTACTACCACTgtaagtttct ... gttcatgtagTTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTC
EST: GTACTACCACT TTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTCEST: gi|58657805|gb|CK046485.1|CK046485
genomic: GTACTACCACTgtaagtttct ... gttcatgtagTTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTC
EST: GATTGGTAATGTTATGACTGATGCACGCTCAACCGGGAAGTACTACCACT TTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTCEST: gi|58675628|gb|CK064315.1|CK064315
genomic: GATTGGTAATGTTATGACTGATGCACGCTCAACCGGGAAGTACTACCACTgtaagtttct ... gttcatgtagTTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTC
EST: GATTGGTAATGTTATGACTGATGCACGCTCAACCGGGAAGTACTACCACT TTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTCEST: gi|2800921|gb|AA754215.1|AA754215
genomic: GATTGGTAATGTTATGACTGATGCACGCTCAACCGGGAAGTACTACCACTgtaagtttct ... gttcatgtagTTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTC
EST: GGGAAGTACTACCACT TTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTCEST: gi|33796706|gb|CF324221.1|CF324221
genomic: GGGAAGTACTACCACTgtaagtttct ... gttcatgtagTTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTC
EST: GATTGGTAATGTTATGACTGATGCACGCTCAACCGGGAAGTACTACCACT TTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTCEST: gi|5003496|gb|AU068645.1|AU068645
genomic: GATTGGTAATGTTATGACTGATGCACGCTCAACCGGGAAGTACTACCACTgtaagtttct ... gttcatgtagTTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTC
EST: GATTGGTAATGTTATGACTGATGCACGCTCAACCGGGAAGTACTACCACT TTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTC
genomic: GATTGGTAATGTTATGACTGATGCACGCTCAACCGGGAAGTACTACCACTgtaagtttct ... gttcatgtagTTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTC
attattttgtctatttctgacacaatactaataagtatttgttatgttcatgtagTTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAG
tactaat putative branch site (score: 1)
aatactaataagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atataaaatccttgagtgtcaacttctgcagatggttaatttaacattattttgtctatttctgacacaatactaataagtatttgttatgttcatgtagTTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA