1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catgtgagaaaaagtcaacggcgtcatctattaaaaaacggagggagtatatcccagaatatatcagcaatcctaactaatcttgtattccatgatgcagTCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGCCGACGGCCACCAGAATCTTGGCTGCCTTGTGCTGTAGTTACATATACAA
species | Oryza sativa |
transcript | LOC_Os06g13720.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAG TCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGCEST: gi|88322936|gb|CI548030.1|CI548030
genomic: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAGgtaagcagat ... catgatgcagTCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGC
EST: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAG TCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGCEST: gi|88974166|gb|CI002785.1|CI002785
genomic: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAGgtaagcagat ... catgatgcagTCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGC
EST: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAG TCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGCEST: gi|218486487|gb|FG956233.1|FG956233
genomic: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAGgtaagcagat ... catgatgcagTCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGC
EST: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAG TCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGCEST: gi|218483530|gb|FG955438.1|FG955438
genomic: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAGgtaagcagat ... catgatgcagTCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGC
EST: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAG TCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCEST: gi|218494530|gb|FG953442.1|FG953442
genomic: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAGgtaagcagat ... catgatgcagTCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTC
EST: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAG TCATTTGGTGTGGACAGGAAGGTGGTGAAAACTGTACTEST: gi|218478459|gb|FG951913.1|FG951913
genomic: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAGgtaagcagat ... catgatgcagTCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACT
EST: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAG TCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGCEST: gi|86424694|gb|CI063455.1|CI063455
genomic: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAGgtaagcagat ... catgatgcagTCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGC
EST: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAG TCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGCEST: gi|88199598|gb|CI199448.1|CI199448
genomic: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAGgtaagcagat ... catgatgcagTCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGC
EST: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAG TCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGC
genomic: ATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAGgtaagcagat ... catgatgcagTCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGC
agtatatcccagaatatatcagcaatcctaactaatcttgtattccatgatgcagTCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGCCGACGGCCACCAGAATCTTGGCTGCCTTGTGCTGTAGTTACATATACAA
agaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtgagaaaaagtcaacggcgtcatctattaaaaaacggagggagtatatcccagaatatatcagcaatcctaactaatcttgtattccatgatgcagTCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTCCCTAGGGTAGCCGACGGCCACCAGAATCTTGGCTGCCTTGTGCTGTAGTTACATATACAA
catgtga
- - - -gaaaaagt
- - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtat