1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtataaactgtgaaaaagaagtgcaaatttgttatttcttgttcctcatatggttgaagaggtcttgtttctcactgtgaattatacttgtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGAGACGTTTAGCAAAGGCTTCCCTTGCCTACAACTGTGAGAG
species | Oryza sativa |
transcript | LOC_Os06g09330.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|87010686|gb|CI312378.1|CI312378
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|86599367|gb|CI251325.1|CI251325
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|86514651|gb|CI157284.1|CI157284
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|86855623|gb|CI268950.1|CI268950
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|87035496|gb|CI190118.1|CI190118
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|88995570|gb|CI022893.1|CI022893
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|88206366|gb|CI206215.1|CI206215
genomic: CTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|86495662|gb|CI138295.1|CI138295
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|8956608|gb|BE230283.1|BE230283
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|87035120|gb|CI189743.1|CI189743
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|7134934|gb|AU082746.1|AU082746
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|89186387|gb|CI262219.1|CI262219
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|218487817|gb|FG955497.1|FG955497
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|218490255|gb|FG953556.1|FG953556
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|88223516|gb|CI223365.1|CI223365
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: GGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGEST: gi|218494998|gb|FG948724.1|FG948724
genomic: GGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
EST: CATTCTCACGGGCCTCCTTTCATTCATG ATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
genomic: CATTCTCACGGGCCTCCTTTCATTCATGgtaagctctt ... gtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAG
ctcatatggttgaagaggtcttgtttctcactgtgaattatacttgtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGAGACGTTTAGCAAAGGCTTCCCTTGCCTACAACTGTGAGAG
ttctcac putative branch site (score: 46)
aattatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtataaactgtgaaaaagaagtgcaaatttgttatttcttgttcctcatatggttgaagaggtcttgtttctcactgtgaattatacttgtgcttgcagATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTACAGAGGGGGAAAAGAGACGTTTAGCAAAGGCTTCCCTTGCCTACAACTGTGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - aaaagaa
- - - - - - - - - - - tgcaaat
- - - - - - - - - - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - atggttg