1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaattccttttctgttgaaacattacacctatggcttatttcggcttaatgttttgactcattacaatctatatattagCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGA
species | Oryza sativa |
transcript | LOC_Os06g08005.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGG CTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACAEST: gi|86251665|gb|CI016954.1|CI016954
genomic: GGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGgtaattcctt ... tatatattagCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACA
EST: GTGAAAGTCGATGACAACATTAACCTTGACCTGG CTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACAEST: gi|29687001|gb|CB683276.1|CB683276
genomic: GTGAAAGTCGATGACAACATTAACCTTGACCTGGgtaattcctt ... tatatattagCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACA
EST: GGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGG CTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACAEST: gi|300215905|gb|HO088531.1|HO088531
genomic: GGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGgtaattcctt ... tatatattagCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACA
EST: GGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGG CTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACAEST: gi|218501509|gb|FG952275.1|FG952275
genomic: GGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGgtaattcctt ... tatatattagCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACA
EST: GGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGG CTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACA
genomic: GGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGgtaattcctt ... tatatattagCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACA
acacctatggcttatttcggcttaatgttttgactcattacaatctatatattagCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGA
ttttgac putative branch site (score: 89)
attacaatctatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattccttttctgttgaaacattacacctatggcttatttcggcttaatgttttgactcattacaatctatatattagCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA