1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacatttacaagcacttaagcctgaacattgcagcagccttgctcttatgctaattacatgtttgtgttctcaatttggtagGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAG
species | Oryza sativa |
transcript | LOC_Os06g06410.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAAEST: gi|88251122|gb|CI349352.1|CI349352
genomic: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtacatttac ... aatttggtagGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAA
EST: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAAEST: gi|88833031|gb|CI369921.1|CI369921
genomic: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtacatttac ... aatttggtagGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAA
EST: TCTACATCGTCCCAACATGTGATAGAGATTTGAAAAGGAGGATAATAAAG GTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAAEST: gi|88379093|gb|CI681926.1|CI681926
genomic: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtacatttac ... aatttggtagGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAA
EST: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAAEST: gi|88970584|gb|CI385274.1|CI385274
genomic: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtacatttac ... aatttggtagGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAA
EST: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAAEST: gi|88847535|gb|CI016028.1|CI016028
genomic: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtacatttac ... aatttggtagGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAA
EST: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAAEST: gi|88846433|gb|CI373201.1|CI373201
genomic: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtacatttac ... aatttggtagGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAA
EST: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAAEST: gi|86502684|gb|CI145317.1|CI145317
genomic: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtacatttac ... aatttggtagGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAA
EST: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAAEST: gi|87015953|gb|CI279705.1|CI279705
genomic: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtacatttac ... aatttggtagGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAA
EST: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAAEST: gi|86828506|gb|CI278611.1|CI278611
genomic: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtacatttac ... aatttggtagGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAA
EST: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAA
genomic: GCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtacatttac ... aatttggtagGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAA
attgcagcagccttgctcttatgctaattacatgtttgtgttctcaatttggtagGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAG
tgctaat putative branch site (score: 2)
taattacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatttacaagcacttaagcctgaacattgcagcagccttgctcttatgctaattacatgtttgtgttctcaatttggtagGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG