1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgtagttcctggaatgacaatttctttctctggtttatactttagtgttgtcctcttggaataaatcagcttacattcttggtggctttgatccttgtagGTGGTTCAAGATTTCAGCAAGAAGAATGCAGAAGCAGAACTTCCCACAGTCACAAGCCACTCAGCAGCAGCATCTCCAGCAGGGAATGTGGTATCGGTAA
species | Oryza sativa |
transcript | LOC_Os06g05870.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTCTAAAAGGGGCTCGAGTGTTGCTGACTCGTTCTCAATGGAGG GTGGTTCAAGATTTCAGCAAGAAGAATGCAGAAGCAGAACTTCCCACAGTCEST: gi|86533149|gb|CI173355.1|CI173355
genomic: GGTCTAAAA-GGGCTCGAGTGTTGCTGACTCGTTCTCAATGGAGGgtactaaaag ... atccttgtagGTGGTTCAAGATTTCAGCAAGAAGAATGCAGAAGCAGAACTTCCCACAGTC
EST: ATGTGCGGTCTAAAAGGGCTCGAGTGTTGCTGACTCGTTCTCAATGGAGG GTGGTTCAAGATTTCAGCAAGAAGAATGCAGAAGCAGAACTTCCCACAGTC
genomic: ATGTGCGGTCTAAAAGGGCTCGAGTGTTGCTGACTCGTTCTCAATGGAGGgtactaaaag ... atccttgtagGTGGTTCAAGATTTCAGCAAGAAGAATGCAGAAGCAGAACTTCCCACAGTC
tgttgtcctcttggaataaatcagcttacattcttggtggctttgatccttgtagGTGGTTCAAGATTTCAGCAAGAAGAATGCAGAAGCAGAACTTCCCACAGTCACAAGCCACTCAGCAGCAGCATCTCCAGCAGGGAATGTGGTATCGGTAA
tccttgt CT-rich tract
aataaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagttcctggaatgacaatttctttctctggtttatactttagtgttgtcctcttggaataaatcagcttacattcttggtggctttgatccttgtagGTGGTTCAAGATTTCAGCAAGAAGAATGCAGAAGCAGAACTTCCCACAGTCACAAGCCACTCAGCAGCAGCATCTCCAGCAGGGAATGTGGTATCGGTAA
- - gttcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtggc